Variant report

Variant	rs10497539
Chromosome Location	chr2:180298424-180298425
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10179194	1.00[ASN][1000 genomes]
rs10497540	0.90[CEU][hapmap];0.86[MKK][hapmap];0.94[TSI][hapmap]
rs10930874	0.89[ASN][1000 genomes]
rs12463394	0.90[CEU][hapmap];0.83[MKK][hapmap];0.89[TSI][hapmap]
rs12467818	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12478234	0.90[CEU][hapmap];0.89[TSI][hapmap]
rs16866729	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16866742	0.90[CEU][hapmap];0.83[MKK][hapmap];0.89[TSI][hapmap]
rs2037242	0.88[CEU][hapmap]
rs2271760	0.81[CEU][hapmap];0.86[MKK][hapmap];0.89[TSI][hapmap]
rs72964238	0.99[ASN][1000 genomes]
rs7340427	0.88[CEU][hapmap]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180293800-180299400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:180293800-180307800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:180294000-180299200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:180294200-180306600	Weak transcription	Liver	Liver
5	chr2:180294200-180307400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:180294600-180299000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr2:180294600-180299400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr2:180294600-180305600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr2:180295800-180299200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr2:180295800-180299400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr2:180295800-180299600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr2:180296000-180299400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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