Variant report

Variant	rs12478234
Chromosome Location	chr2:180334969-180334970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10497540	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12463394	1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12623873	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16866742	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2037242	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2271760	0.90[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56680579	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56790532	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7340427	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180309200-180352200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr2:180325200-180351400	Weak transcription	Psoas Muscle	Psoas
3	chr2:180332400-180345800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:180332800-180352600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:180333400-180335800	Strong transcription	Liver	Liver
6	chr2:180334200-180335600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr2:180334400-180335000	Enhancers	Right Atrium	heart
8	chr2:180334600-180335400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr2:180334600-180335400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr2:180334600-180335600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr2:180334600-180335800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr2:180334800-180335200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr2:180334800-180335400	Enhancers	H9 Cell Line	embryonic stem cell
14	chr2:180334800-180335400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr2:180334800-180335400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr2:180334800-180335600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr2:180334800-180335600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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