Variant report

Variant	rs10497540
Chromosome Location	chr2:180312395-180312396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180302328..180304354-chr2:180312271..180313861,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12463394	0.86[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12467818	0.82[EUR][1000 genomes]
rs12478234	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12623873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16866742	0.86[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2037242	1.00[CEU][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2271760	1.00[ASW][hapmap];0.90[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56680579	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56790532	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7340427	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180307400-180312800	Enhancers	NHEK	skin
2	chr2:180307800-180320800	Weak transcription	HepG2	liver
3	chr2:180308200-180332600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:180309200-180352200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr2:180310200-180312400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr2:180311000-180312600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr2:180311000-180312600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:180311200-180312400	Enhancers	Fetal Intestine Small	intestine
9	chr2:180311200-180312400	Enhancers	HMEC	breast
10	chr2:180311200-180312600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:180311200-180312800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr2:180311200-180312800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr2:180311400-180312400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr2:180311400-180312600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr2:180311400-180319200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:180311400-180322200	Weak transcription	Liver	Liver
17	chr2:180311800-180312400	Enhancers	Fetal Intestine Large	intestine
18	chr2:180311800-180319200	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr2:180312200-180312400	Enhancers	Fetal Brain Female	brain
20	chr2:180312200-180312600	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr2:180312200-180312600	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr2:180312200-180312800	Enhancers	HUES64 Cell Line	embryonic stem cell

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