Variant report

Variant	rs12623873
Chromosome Location	chr2:180310604-180310605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10497540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12463394	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12467818	0.82[EUR][1000 genomes]
rs12478234	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16866742	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2037242	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2271760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56680579	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56790532	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7340427	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180306600-180311400	Strong transcription	Liver	Liver
2	chr2:180307400-180312800	Enhancers	NHEK	skin
3	chr2:180307800-180320800	Weak transcription	HepG2	liver
4	chr2:180308200-180332600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:180308600-180311200	Weak transcription	HMEC	breast
6	chr2:180308800-180311400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:180309200-180311400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:180309200-180352200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr2:180309400-180312200	Weak transcription	Fetal Brain Female	brain
10	chr2:180309800-180311200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:180309800-180311200	Weak transcription	Fetal Intestine Large	intestine
12	chr2:180309800-180311200	Weak transcription	Fetal Intestine Small	intestine
13	chr2:180309800-180311200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr2:180310200-180312200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr2:180310200-180312200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr2:180310200-180312400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr2:180310400-180310800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr2:180310400-180312200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr2:180310600-180311000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr2:180310600-180311000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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