Variant report

Variant	rs2271760
Chromosome Location	chr2:180311207-180311208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10497540	1.00[ASW][hapmap];0.90[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12463394	0.86[ASW][hapmap];0.90[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.90[MEX][hapmap];0.97[MKK][hapmap];0.89[TSI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12467818	0.82[EUR][1000 genomes]
rs12478234	0.90[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12623873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16866742	0.86[ASW][hapmap];0.90[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];0.97[MKK][hapmap];0.89[TSI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2037242	0.88[CEU][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56680579	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56790532	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7340427	0.88[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2271760	PDE1A	cis	cerebellum	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180306600-180311400	Strong transcription	Liver	Liver
2	chr2:180307400-180312800	Enhancers	NHEK	skin
3	chr2:180307800-180320800	Weak transcription	HepG2	liver
4	chr2:180308200-180332600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:180308800-180311400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:180309200-180311400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:180309200-180352200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr2:180309400-180312200	Weak transcription	Fetal Brain Female	brain
9	chr2:180310200-180312200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr2:180310200-180312200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr2:180310200-180312400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr2:180310400-180312200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr2:180310800-180311400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr2:180311000-180312600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr2:180311000-180312600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr2:180311200-180311400	Enhancers	Fetal Intestine Large	intestine
17	chr2:180311200-180311400	Enhancers	Fetal Lung	lung
18	chr2:180311200-180311800	Enhancers	Placenta Amnion	Placenta Amnion
19	chr2:180311200-180312400	Enhancers	Fetal Intestine Small	intestine
20	chr2:180311200-180312400	Enhancers	HMEC	breast
21	chr2:180311200-180312600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr2:180311200-180312800	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr2:180311200-180312800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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