Variant report

Variant	rs56680579
Chromosome Location	chr2:180320487-180320488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10497540	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12463394	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12467818	0.83[EUR][1000 genomes]
rs12478234	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12623873	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16866742	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2037242	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2271760	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56790532	0.95[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7340427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180307800-180320800	Weak transcription	HepG2	liver
2	chr2:180308200-180332600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:180309200-180352200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr2:180311400-180322200	Weak transcription	Liver	Liver
5	chr2:180318400-180320800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr2:180318400-180320800	Enhancers	HMEC	breast
7	chr2:180318400-180321000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:180318600-180320800	Enhancers	NHDF-Ad	bronchial
9	chr2:180318600-180321000	Enhancers	Osteobl	bone
10	chr2:180318600-180321200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr2:180319200-180321000	Enhancers	HUVEC	blood vessel
12	chr2:180320000-180320600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:180320200-180320600	Weak transcription	NHLF	lung
14	chr2:180320200-180322400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr2:180320200-180324200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr2:180320400-180322600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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