Variant report

Variant	rs10499098
Chromosome Location	chr6:121063152-121063153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11153956	0.98[ASN][1000 genomes]
rs11153957	0.98[ASN][1000 genomes]
rs11961543	0.85[EUR][1000 genomes]
rs11965399	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967874	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11969028	0.84[EUR][1000 genomes]
rs11970527	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12193834	0.98[ASN][1000 genomes]
rs12193885	0.98[ASN][1000 genomes]
rs12213687	0.98[ASN][1000 genomes]
rs12661436	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12665301	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1339017	0.98[ASN][1000 genomes]
rs17082730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17082740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2358048	0.82[EUR][1000 genomes]
rs4574687	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55908530	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933679	0.82[EUR][1000 genomes]
rs6935352	0.96[ASN][1000 genomes]
rs6935477	0.96[ASN][1000 genomes]
rs72968094	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72969940	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72969948	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3366823	chr6:121043302-121064055	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121058200-121067400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:121062600-121063600	Weak transcription	Brain Germinal Matrix	brain

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