Variant report
| Variant | rs72968094 |
|---|---|
| Chromosome Location | chr6:121009824-121009825 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10499098 | 0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11153944 | 0.81[ASN][1000 genomes] |
| rs11153956 | 0.85[ASN][1000 genomes] |
| rs11153957 | 0.85[ASN][1000 genomes] |
| rs11961543 | 0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11965399 | 0.83[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11967874 | 0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11969028 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11970527 | 0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12193834 | 0.85[ASN][1000 genomes] |
| rs12193885 | 0.85[ASN][1000 genomes] |
| rs12213687 | 0.85[ASN][1000 genomes] |
| rs12661436 | 0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12665301 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1339017 | 0.83[ASN][1000 genomes] |
| rs17082730 | 0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs17082740 | 0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2358048 | 0.92[EUR][1000 genomes] |
| rs4574687 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs55908530 | 0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6933679 | 0.92[EUR][1000 genomes] |
| rs6935352 | 0.86[ASN][1000 genomes] |
| rs6935477 | 0.86[ASN][1000 genomes] |
| rs72969940 | 0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72969948 | 0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2757191 | chr6:120967277-121029949 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv2759466 | chr6:120967277-121029949 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv886586 | chr6:120968061-121020821 | ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv886588 | chr6:120978943-121016929 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 5 | nsv886589 | chr6:120978943-121020821 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 6 | esv2754699 | chr6:120983610-121029949 | Weak transcription Enhancers Active TSS Flanking Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:121009800-121010400 | Active TSS | ES-I3 Cell Line | embryonic stem cell |
