Variant report

Variant	rs12665301
Chromosome Location	chr6:121003534-121003535
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr6:121003330-121003668	H1-hESC	embryonic stem cell:	n/a	chr6:121003482-121003497
2	MAFF	chr6:121003314-121003666	K562	blood:	n/a	chr6:121003481-121003499
3	MAFK	chr6:121003301-121003772	HepG2	liver:	n/a	chr6:121003482-121003497
4	MAFK	chr6:121003307-121003673	K562	blood:	n/a	chr6:121003482-121003497
5	MAFF	chr6:121003299-121003745	HepG2	liver:	n/a	chr6:121003481-121003499
6	MAFK	chr6:121003302-121003744	HepG2	liver:	n/a	chr6:121003482-121003497
7	MAFK	chr6:121003270-121003850	GM12878	blood:	n/a	chr6:121003482-121003497
8	MAFK	chr6:121003311-121003650	Hela-S3	cervix:	n/a	chr6:121003482-121003497
9	MAFK	chr6:121003300-121003703	IMR90	lung:	n/a	chr6:121003482-121003497

Variant related genes	Relation type
RNA5SP215	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10499098	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11153944	0.81[ASN][1000 genomes]
rs11153956	0.85[ASN][1000 genomes]
rs11153957	0.85[ASN][1000 genomes]
rs11961543	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11965399	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11967874	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11969028	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11970527	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12193834	0.85[ASN][1000 genomes]
rs12193885	0.85[ASN][1000 genomes]
rs12213687	0.85[ASN][1000 genomes]
rs12661436	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1339017	0.83[ASN][1000 genomes]
rs17082730	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17082740	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2358048	0.92[EUR][1000 genomes]
rs4574687	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55908530	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6933679	0.92[EUR][1000 genomes]
rs6935352	0.86[ASN][1000 genomes]
rs6935477	0.86[ASN][1000 genomes]
rs72968094	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72969940	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72969948	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757191	chr6:120967277-121029949	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2759466	chr6:120967277-121029949	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886586	chr6:120968061-121020821	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886587	chr6:120978943-121006814	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv886588	chr6:120978943-121016929	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv886589	chr6:120978943-121020821	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	esv2754699	chr6:120983610-121029949	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv464036	chr6:120983748-121008679	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	nsv604570	chr6:120983748-121008679	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links