Variant report

Variant	rs10500631
Chromosome Location	chr11:4926063-4926064
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10500625	1.00[CEU][hapmap]
rs10500626	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10836735	0.84[CEU][hapmap]
rs11034067	0.91[CEU][hapmap]
rs11034071	0.91[CEU][hapmap]
rs11034089	0.91[CEU][hapmap]
rs11034090	0.91[CEU][hapmap]
rs11034094	0.91[CEU][hapmap]
rs11034114	0.84[CEU][hapmap]
rs11822216	0.82[CEU][hapmap]
rs12365464	0.84[CEU][hapmap]
rs12785245	0.81[CEU][hapmap]
rs12785274	1.00[CEU][hapmap]
rs12786973	1.00[CEU][hapmap]
rs12787796	0.91[CEU][hapmap]
rs12788102	0.81[CEU][hapmap]
rs12788447	1.00[CEU][hapmap]
rs12789492	0.81[CEU][hapmap]
rs12793425	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12793428	0.84[CEU][hapmap]
rs12794894	1.00[CEU][hapmap]
rs12795212	0.90[CEU][hapmap]
rs12796015	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12796618	0.82[CEU][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12799928	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12801368	1.00[CEU][hapmap]
rs12801757	0.81[CEU][hapmap]
rs12802922	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12804676	1.00[CEU][hapmap]
rs12806014	1.00[CEU][hapmap]
rs12806476	0.81[CEU][hapmap]
rs12806727	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12808215	0.81[CEU][hapmap]
rs1368825	0.84[CEU][hapmap]
rs1433899	1.00[CEU][hapmap]
rs1433921	0.82[CEU][hapmap]
rs1541946	0.91[CEU][hapmap]
rs1594812	0.81[CEU][hapmap]
rs17227393	0.81[CEU][hapmap]
rs17227484	0.81[CEU][hapmap]
rs17227978	0.81[CEU][hapmap]
rs17228092	0.81[CEU][hapmap]
rs17228176	0.91[CEU][hapmap]
rs17228183	0.91[CEU][hapmap]
rs17228218	0.82[CEU][hapmap]
rs17247598	1.00[CEU][hapmap]
rs17249369	1.00[CEU][hapmap]
rs17249695	0.91[CEU][hapmap]
rs17250199	1.00[CEU][hapmap]
rs17251220	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17251261	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17324609	0.81[CEU][hapmap]
rs17325567	0.81[CEU][hapmap]
rs17327845	1.00[CEU][hapmap]
rs17327907	1.00[CEU][hapmap]
rs17328143	0.91[CEU][hapmap]
rs17328337	0.91[CEU][hapmap]
rs17328565	1.00[CEU][hapmap]
rs17329242	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17337601	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17337649	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1865282	0.91[CEU][hapmap]
rs1865284	0.82[CEU][hapmap]
rs2412395	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs34301246	0.89[EUR][1000 genomes]
rs34583466	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34742470	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35408660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35720831	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35918613	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4910684	0.82[CEU][hapmap]
rs4910686	1.00[CEU][hapmap]
rs4910687	0.91[CEU][hapmap]
rs4910688	0.91[CEU][hapmap]
rs4910689	0.84[CEU][hapmap]
rs4910691	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7925039	0.81[EUR][1000 genomes]
rs7934332	0.84[CEU][hapmap]
rs7948040	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054847	chr11:4642875-5200656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	esv2758254	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	esv2759799	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
4	nsv896917	chr11:4917089-4935470	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv521088	chr11:4925933-4928866	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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