Variant report

Variant	rs11034067
Chromosome Location	chr11:4842023-4842024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr11:4841840-4842040	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr11:4841850-4842160	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr11:4841848-4842141	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
OR51F2	TF binding region

Extended variants
information (count: 193 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:168)

rs_ID	r²[population]
rs1030722	0.89[AMR][1000 genomes]
rs10500625	0.83[CEU][hapmap]
rs10500626	0.83[CEU][hapmap]
rs10500631	0.91[CEU][hapmap]
rs10836735	0.92[CEU][hapmap]
rs11034071	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs11034086	1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap]
rs11034089	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11034090	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11034094	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11034114	0.92[CEU][hapmap]
rs11822216	0.81[TSI][hapmap]
rs12365464	0.92[CEU][hapmap]
rs12785245	0.81[CEU][hapmap];0.91[AMR][1000 genomes]
rs12785274	0.91[CEU][hapmap]
rs12786973	0.91[CEU][hapmap]
rs12787796	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12788102	1.00[GIH][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap];0.84[AMR][1000 genomes]
rs12788447	0.89[CEU][hapmap]
rs12789215	0.89[AMR][1000 genomes]
rs12789492	1.00[GIH][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap];0.89[AMR][1000 genomes]
rs12791402	0.89[AMR][1000 genomes]
rs12792898	0.87[AMR][1000 genomes]
rs12793425	0.83[CEU][hapmap];0.89[AMR][1000 genomes]
rs12793428	0.92[CEU][hapmap]
rs12794880	0.89[AMR][1000 genomes]
rs12794894	0.83[CEU][hapmap]
rs12795212	0.81[CEU][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12795377	0.83[AMR][1000 genomes]
rs12796015	0.83[CEU][hapmap]
rs12797008	0.89[AMR][1000 genomes]
rs12797269	0.89[AMR][1000 genomes]
rs12799928	0.83[CEU][hapmap]
rs12801309	0.89[AMR][1000 genomes]
rs12801339	0.91[AMR][1000 genomes]
rs12801368	0.91[CEU][hapmap]
rs12801465	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12801757	1.00[GIH][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap];0.89[AMR][1000 genomes]
rs12802561	0.89[AMR][1000 genomes]
rs12802647	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12802922	0.83[CEU][hapmap]
rs12804065	0.89[AMR][1000 genomes]
rs12804676	0.83[CEU][hapmap]
rs12806014	0.88[CEU][hapmap]
rs12806476	1.00[GIH][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap];0.89[AMR][1000 genomes]
rs12808215	1.00[GIH][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap];0.89[AMR][1000 genomes]
rs1368825	0.92[CEU][hapmap]
rs1433899	0.82[CEU][hapmap]
rs1433913	0.89[AMR][1000 genomes]
rs1541946	0.83[CEU][hapmap]
rs1594811	0.89[AMR][1000 genomes]
rs1594812	1.00[GIH][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap];0.89[AMR][1000 genomes]
rs1594813	0.89[AMR][1000 genomes]
rs1594814	0.89[AMR][1000 genomes]
rs17227393	1.00[GIH][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap];0.83[AMR][1000 genomes]
rs17227456	0.91[AMR][1000 genomes]
rs17227484	1.00[GIH][hapmap];0.89[AMR][1000 genomes]
rs17227547	0.89[AMR][1000 genomes]
rs17227809	0.89[AMR][1000 genomes]
rs17227978	1.00[GIH][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap];0.89[AMR][1000 genomes]
rs17228092	1.00[GIH][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes]
rs17228176	0.83[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17228183	0.83[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17228218	0.83[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17247598	0.85[CEU][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17249369	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs17249695	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17249744	1.00[YRI][hapmap]
rs17250199	0.91[CEU][hapmap]
rs17251220	0.83[CEU][hapmap]
rs17251261	0.83[CEU][hapmap]
rs17324609	1.00[GIH][hapmap];0.87[AMR][1000 genomes]
rs17325330	0.89[AMR][1000 genomes]
rs17325477	0.89[AMR][1000 genomes]
rs17325567	1.00[GIH][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap];0.89[AMR][1000 genomes]
rs17325742	1.00[GIH][hapmap];0.85[MEX][hapmap]
rs17327254	1.00[GIH][hapmap];0.85[MEX][hapmap]
rs17327845	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs17327907	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs17328143	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17328337	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17328371	1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap]
rs17328565	0.91[CEU][hapmap];1.00[GIH][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17329242	0.83[CEU][hapmap];0.87[AMR][1000 genomes]
rs17337649	0.83[CEU][hapmap]
rs1865282	0.83[CEU][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs1897739	1.00[GIH][hapmap];0.87[TSI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2164014	0.89[AMR][1000 genomes]
rs2412395	0.83[CEU][hapmap]
rs2412433	0.89[AMR][1000 genomes]
rs2898964	0.89[AMR][1000 genomes]
rs2898965	0.89[AMR][1000 genomes]
rs34009241	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34012768	0.89[AMR][1000 genomes]
rs34024161	0.87[AMR][1000 genomes]
rs34104979	0.89[AMR][1000 genomes]
rs34170551	0.89[AMR][1000 genomes]
rs34231378	0.89[AMR][1000 genomes]
rs34233903	0.89[AMR][1000 genomes]
rs34234149	0.89[AMR][1000 genomes]
rs34238074	0.89[AMR][1000 genomes]
rs34238923	0.89[AMR][1000 genomes]
rs34245878	0.87[AMR][1000 genomes]
rs34296834	0.89[AMR][1000 genomes]
rs34352527	0.89[AMR][1000 genomes]
rs34367456	0.87[AMR][1000 genomes]
rs34386616	0.87[AMR][1000 genomes]
rs34471580	0.89[AMR][1000 genomes]
rs34605374	0.89[AMR][1000 genomes]
rs34740482	0.89[AMR][1000 genomes]
rs34758607	0.87[AMR][1000 genomes]
rs34774719	0.89[AMR][1000 genomes]
rs34775015	0.89[AMR][1000 genomes]
rs34798636	0.89[AMR][1000 genomes]
rs34885098	0.91[AMR][1000 genomes]
rs34971311	0.84[AMR][1000 genomes]
rs35003053	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35045960	0.89[AMR][1000 genomes]
rs35094994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35265535	0.89[AMR][1000 genomes]
rs35324703	0.87[AMR][1000 genomes]
rs35628152	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35632863	0.89[AMR][1000 genomes]
rs35720831	0.82[AMR][1000 genomes]
rs35838746	0.87[AMR][1000 genomes]
rs35902686	0.89[AMR][1000 genomes]
rs35918613	0.82[AMR][1000 genomes]
rs35956756	0.87[AMR][1000 genomes]
rs36009426	0.89[AMR][1000 genomes]
rs36060165	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36093088	0.89[AMR][1000 genomes]
rs4910528	0.82[EUR][1000 genomes]
rs4910672	0.84[AMR][1000 genomes]
rs4910673	0.89[AMR][1000 genomes]
rs4910677	0.85[AMR][1000 genomes]
rs4910679	0.89[AMR][1000 genomes]
rs4910686	0.91[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs4910687	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs4910688	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4910689	0.92[CEU][hapmap];0.81[TSI][hapmap]
rs4910691	0.82[AMR][1000 genomes]
rs58754867	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60113282	0.89[AMR][1000 genomes]
rs60249619	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60548866	0.89[AMR][1000 genomes]
rs60617306	0.89[AMR][1000 genomes]
rs66473029	0.89[AMR][1000 genomes]
rs66519116	0.89[AMR][1000 genomes]
rs66751800	0.89[AMR][1000 genomes]
rs67119549	0.89[AMR][1000 genomes]
rs67176708	0.89[AMR][1000 genomes]
rs67885020	0.87[AMR][1000 genomes]
rs68127593	0.89[AMR][1000 genomes]
rs7117389	1.00[YRI][hapmap]
rs71480714	0.87[AMR][1000 genomes]
rs71480715	0.89[AMR][1000 genomes]
rs71480716	0.91[AMR][1000 genomes]
rs71480717	0.89[AMR][1000 genomes]
rs71480718	0.89[AMR][1000 genomes]
rs71480719	0.89[AMR][1000 genomes]
rs71480720	0.89[AMR][1000 genomes]
rs73399018	0.89[AMR][1000 genomes]
rs73399021	0.87[AMR][1000 genomes]
rs73399027	0.89[AMR][1000 genomes]
rs73399028	0.89[AMR][1000 genomes]
rs73399030	0.89[AMR][1000 genomes]
rs7934332	0.92[CEU][hapmap];0.81[TSI][hapmap]
rs7948040	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048224	chr11:4390227-4920324	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv540917	chr11:4390227-4920324	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
3	esv3424302	chr11:4585155-4880050	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1054847	chr11:4642875-5200656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
5	nsv896915	chr11:4659419-4844393	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	esv1809118	chr11:4782207-4843426	Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	esv2760633	chr11:4803980-4910384	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1035355	chr11:4805922-4907672	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv1039703	chr11:4806669-4910372	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	nsv553176	chr11:4806706-4909000	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	nsv553177	chr11:4806872-4871506	Enhancers Bivalent/Poised TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
12	nsv553178	chr11:4806872-4909000	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
13	nsv553179	chr11:4806872-4910224	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
14	nsv1045537	chr11:4807304-4904064	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
15	nsv467665	chr11:4808227-4871481	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
16	nsv553180	chr11:4808227-4871481	Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
17	nsv553181	chr11:4811933-4910224	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
18	nsv553182	chr11:4814850-4909000	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
19	nsv1035941	chr11:4815059-4904064	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
20	nsv553183	chr11:4815348-4909000	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
21	nsv467666	chr11:4815348-4917089	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
22	nsv553184	chr11:4815348-4917089	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
23	nsv553185	chr11:4816548-4905202	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
24	nsv553187	chr11:4819907-4883396	Enhancers Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
25	nsv553188	chr11:4823783-4909000	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11034067	OR52E8	cis	cerebellum	SCAN
rs11034067	TSPAN32	cis	cerebellum	SCAN
rs11034067	OR51E2	cis	parietal	SCAN
rs11034067	RPL27A	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:4840400-4842400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr11:4841000-4842200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links