Variant report

Variant	rs10502095
Chromosome Location	chr11:107454746-107454747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:107450869..107454942-chr11:107456753..107459492,3	K562	blood:

Variant related genes	Relation type
ENSG00000270969	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11212247	1.00[EUR][1000 genomes]
rs11212249	1.00[EUR][1000 genomes]
rs11212252	1.00[EUR][1000 genomes]
rs11212267	1.00[EUR][1000 genomes]
rs12285786	1.00[EUR][1000 genomes]
rs12293353	1.00[EUR][1000 genomes]
rs12421850	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17107135	1.00[EUR][1000 genomes]
rs478625	1.00[EUR][1000 genomes]
rs509186	1.00[EUR][1000 genomes]
rs529552	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55928933	1.00[EUR][1000 genomes]
rs564837	1.00[EUR][1000 genomes]
rs590334	1.00[EUR][1000 genomes]
rs602435	1.00[EUR][1000 genomes]
rs61200975	1.00[EUR][1000 genomes]
rs617109	1.00[EUR][1000 genomes]
rs633192	1.00[EUR][1000 genomes]
rs680830	1.00[EUR][1000 genomes]
rs7121279	1.00[EUR][1000 genomes]
rs7123777	1.00[EUR][1000 genomes]
rs7928774	1.00[EUR][1000 genomes]
rs9943533	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038368	chr11:107116577-107664181	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv541163	chr11:107116577-107664181	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv556376	chr11:107250851-107486598	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107454200-107455000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:107454200-107455200	Enhancers	HSMM	muscle
3	chr11:107454400-107455000	Enhancers	NHDF-Ad	bronchial
4	chr11:107454400-107455000	Enhancers	NHEK	skin
5	chr11:107454400-107455200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:107454400-107455200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:107454400-107455400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr11:107454600-107455000	Enhancers	HMEC	breast

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