Variant report

Variant	rs17107135
Chromosome Location	chr11:107427616-107427617
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10502095	1.00[EUR][1000 genomes]
rs11212247	1.00[EUR][1000 genomes]
rs11212249	1.00[EUR][1000 genomes]
rs11212252	1.00[EUR][1000 genomes]
rs11212267	1.00[EUR][1000 genomes]
rs12285786	1.00[EUR][1000 genomes]
rs12293353	1.00[EUR][1000 genomes]
rs12421850	1.00[EUR][1000 genomes]
rs478625	1.00[EUR][1000 genomes]
rs509186	1.00[EUR][1000 genomes]
rs529552	1.00[EUR][1000 genomes]
rs55928933	1.00[EUR][1000 genomes]
rs564837	1.00[EUR][1000 genomes]
rs590334	1.00[EUR][1000 genomes]
rs602435	1.00[EUR][1000 genomes]
rs61200975	1.00[EUR][1000 genomes]
rs617109	1.00[EUR][1000 genomes]
rs633192	1.00[EUR][1000 genomes]
rs680830	1.00[EUR][1000 genomes]
rs7121279	1.00[EUR][1000 genomes]
rs7123777	1.00[EUR][1000 genomes]
rs7928774	1.00[EUR][1000 genomes]
rs9943533	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898365	chr11:106944975-107430300	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv898366	chr11:106944975-107433835	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv898367	chr11:106944975-107443420	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv898369	chr11:106958304-107443420	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv898370	chr11:107027991-107430300	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv898372	chr11:107049968-107433835	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1038368	chr11:107116577-107664181	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv541163	chr11:107116577-107664181	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv898373	chr11:107124903-107433835	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv556376	chr11:107250851-107486598	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv898376	chr11:107299631-107443420	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107370000-107433800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr11:107372000-107435600	Weak transcription	Colonic Mucosa	Colon
3	chr11:107372800-107434600	Weak transcription	Placenta	Placenta
4	chr11:107376600-107434600	Weak transcription	Lung	lung
5	chr11:107376800-107434600	Weak transcription	Psoas Muscle	Psoas
6	chr11:107377000-107432600	Weak transcription	K562	blood
7	chr11:107378600-107433800	Weak transcription	Fetal Kidney	kidney
8	chr11:107382000-107434200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr11:107389800-107434600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr11:107389800-107435600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:107395200-107431800	Weak transcription	A549	lung
12	chr11:107399800-107435600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:107401200-107434200	Weak transcription	Fetal Brain Female	brain
14	chr11:107402600-107430000	Weak transcription	Colon Smooth Muscle	Colon
15	chr11:107403000-107434600	Weak transcription	Fetal Thymus	thymus
16	chr11:107406400-107427800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:107406800-107433200	Weak transcription	HSMMtube	muscle
18	chr11:107407200-107434400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr11:107407800-107433800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:107408000-107434600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:107408200-107435800	Weak transcription	Gastric	stomach
22	chr11:107409600-107434600	Weak transcription	HepG2	liver
23	chr11:107412000-107433600	Weak transcription	Small Intestine	intestine
24	chr11:107416000-107432400	Weak transcription	NHLF	lung
25	chr11:107416200-107433600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr11:107416200-107433600	Weak transcription	Brain Hippocampus Middle	brain
27	chr11:107416200-107434600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr11:107416400-107432600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:107416400-107432800	Weak transcription	Hela-S3	cervix
30	chr11:107416400-107433000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:107416600-107431800	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr11:107416800-107427800	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr11:107417200-107429000	Weak transcription	Osteobl	bone
34	chr11:107417200-107432000	Weak transcription	NHEK	skin
35	chr11:107417400-107429600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr11:107417400-107432400	Weak transcription	HMEC	breast
37	chr11:107417600-107433200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr11:107417600-107433600	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr11:107419400-107430200	Weak transcription	Fetal Brain Male	brain
40	chr11:107419600-107434600	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr11:107420800-107427800	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr11:107421400-107434600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr11:107421400-107435800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr11:107421600-107429000	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr11:107421600-107434400	Weak transcription	Brain Angular Gyrus	brain
46	chr11:107421600-107434600	Weak transcription	Aorta	Aorta
47	chr11:107421600-107434600	Weak transcription	Esophagus	oesophagus
48	chr11:107421600-107434600	Weak transcription	Right Ventricle	heart
49	chr11:107421600-107434800	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr11:107421600-107435400	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links