Variant report

Variant	rs61200975
Chromosome Location	chr11:107372791-107372792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10502095	1.00[EUR][1000 genomes]
rs11212247	1.00[EUR][1000 genomes]
rs11212249	1.00[EUR][1000 genomes]
rs11212252	1.00[EUR][1000 genomes]
rs11212267	1.00[EUR][1000 genomes]
rs12285786	1.00[EUR][1000 genomes]
rs12293353	1.00[EUR][1000 genomes]
rs12421850	1.00[EUR][1000 genomes]
rs17107135	1.00[EUR][1000 genomes]
rs478625	1.00[EUR][1000 genomes]
rs509186	1.00[EUR][1000 genomes]
rs529552	1.00[EUR][1000 genomes]
rs55758825	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55928933	1.00[EUR][1000 genomes]
rs56345184	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs564837	1.00[EUR][1000 genomes]
rs590334	1.00[EUR][1000 genomes]
rs59177580	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60200073	0.84[AFR][1000 genomes]
rs602435	1.00[EUR][1000 genomes]
rs617109	1.00[EUR][1000 genomes]
rs633192	1.00[EUR][1000 genomes]
rs680830	1.00[EUR][1000 genomes]
rs7121279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7122977	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7123777	1.00[EUR][1000 genomes]
rs73551676	0.86[AFR][1000 genomes]
rs7928774	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9943533	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898365	chr11:106944975-107430300	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv898366	chr11:106944975-107433835	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv898367	chr11:106944975-107443420	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv898369	chr11:106958304-107443420	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv898370	chr11:107027991-107430300	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv898372	chr11:107049968-107433835	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1038368	chr11:107116577-107664181	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv541163	chr11:107116577-107664181	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv898373	chr11:107124903-107433835	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv2756363	chr11:107189790-107376790	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	nsv556376	chr11:107250851-107486598	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv898376	chr11:107299631-107443420	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107364000-107394000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:107364200-107374000	Weak transcription	NHDF-Ad	bronchial
3	chr11:107364400-107374600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr11:107367200-107375400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:107367200-107387400	Weak transcription	Fetal Heart	heart
6	chr11:107367400-107375200	Weak transcription	Brain Angular Gyrus	brain
7	chr11:107369200-107406400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:107369800-107372800	Weak transcription	HUVEC	blood vessel
9	chr11:107370000-107373200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr11:107370000-107433800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr11:107370800-107374800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:107371000-107377000	Weak transcription	NHLF	lung
13	chr11:107371000-107383200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:107371200-107374400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr11:107371200-107393000	Weak transcription	Brain Substantia Nigra	brain
16	chr11:107371200-107421200	Weak transcription	Right Ventricle	heart
17	chr11:107371600-107373400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:107371600-107373400	ZNF genes & repeats	Dnd41	blood
19	chr11:107371600-107373800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
20	chr11:107371800-107373000	Strong transcription	HSMM	muscle
21	chr11:107371800-107373400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:107372000-107373200	ZNF genes & repeats	Primary B cells from cord blood	blood
23	chr11:107372000-107373200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:107372000-107373400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:107372000-107373800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:107372000-107374600	ZNF genes & repeats	Primary T cells from cord blood	blood
27	chr11:107372000-107375800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:107372000-107376600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr11:107372000-107376600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:107372000-107376600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:107372000-107376600	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr11:107372000-107435600	Weak transcription	Colonic Mucosa	Colon
33	chr11:107372200-107373200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:107372400-107372800	ZNF genes & repeats	Fetal Brain Male	brain
35	chr11:107372400-107372800	ZNF genes & repeats	Fetal Kidney	kidney
36	chr11:107372400-107373000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:107372400-107373000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
38	chr11:107372400-107373000	ZNF genes & repeats	Liver	Liver
39	chr11:107372400-107373000	ZNF genes & repeats	Brain Anterior Caudate	brain
40	chr11:107372400-107373000	ZNF genes & repeats	Brain Hippocampus Middle	brain
41	chr11:107372400-107373000	ZNF genes & repeats	Fetal Brain Female	brain
42	chr11:107372400-107373000	ZNF genes & repeats	Psoas Muscle	Psoas
43	chr11:107372400-107373200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:107372400-107373200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
45	chr11:107372400-107373200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
46	chr11:107372400-107373200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
47	chr11:107372400-107373200	ZNF genes & repeats	HMEC	breast
48	chr11:107372400-107373200	Strong transcription	NH-A	brain
49	chr11:107372400-107373400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
50	chr11:107372400-107373400	ZNF genes & repeats	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links