Variant report
| Variant | rs12421850 |
|---|---|
| Chromosome Location | chr11:107451172-107451173 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000270969 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10502095 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11212247 | 1.00[EUR][1000 genomes] |
| rs11212249 | 1.00[EUR][1000 genomes] |
| rs11212252 | 1.00[EUR][1000 genomes] |
| rs11212267 | 1.00[EUR][1000 genomes] |
| rs12285786 | 1.00[EUR][1000 genomes] |
| rs12293353 | 1.00[EUR][1000 genomes] |
| rs17107135 | 1.00[EUR][1000 genomes] |
| rs478625 | 1.00[EUR][1000 genomes] |
| rs509186 | 1.00[EUR][1000 genomes] |
| rs529552 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55928933 | 1.00[EUR][1000 genomes] |
| rs564837 | 1.00[EUR][1000 genomes] |
| rs590334 | 1.00[EUR][1000 genomes] |
| rs602435 | 1.00[EUR][1000 genomes] |
| rs61200975 | 1.00[EUR][1000 genomes] |
| rs617109 | 1.00[EUR][1000 genomes] |
| rs633192 | 1.00[EUR][1000 genomes] |
| rs680830 | 1.00[EUR][1000 genomes] |
| rs7121279 | 1.00[EUR][1000 genomes] |
| rs7123777 | 1.00[EUR][1000 genomes] |
| rs7928774 | 1.00[EUR][1000 genomes] |
| rs9943533 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1038368 | chr11:107116577-107664181 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv541163 | chr11:107116577-107664181 | Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| 3 | nsv556376 | chr11:107250851-107486598 | Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv533794 | chr11:107349817-108093259 | Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 45 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
