Variant report

Variant	rs10505093
Chromosome Location	chr8:107617360-107617361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:107616460..107618563-chr8:107620891..107623162,2	MCF-7	breast:
2	chr8:107591263..107592777-chr8:107615889..107617412,2	MCF-7	breast:
3	chr8:107616759..107623874-chr8:107668754..107672668,12	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZFPM2-6	chr8:107617010-107617432	NONHSAT128254

Variant related genes	Relation type
ENSG00000164830	Chromatin interaction
ENSG00000253582	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2045786	0.81[ASN][1000 genomes]
rs2045789	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3101526	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs3101528	0.83[CHB][hapmap];0.81[CHD][hapmap]
rs3101542	0.88[CHB][hapmap];0.92[CHD][hapmap];0.81[ASN][1000 genomes]
rs3101543	0.88[CHB][hapmap];0.81[ASN][1000 genomes]
rs3101547	0.80[ASN][1000 genomes]
rs3101548	0.89[CHB][hapmap];0.92[CHD][hapmap];0.80[ASN][1000 genomes]
rs3110421	0.89[CHB][hapmap];0.80[ASN][1000 genomes]
rs3110423	0.89[CHB][hapmap];0.80[ASN][1000 genomes]
rs3110424	0.80[ASN][1000 genomes]
rs3110430	0.92[CHD][hapmap]
rs3110434	0.81[ASN][1000 genomes]
rs3110435	0.81[ASN][1000 genomes]
rs3132803	0.88[CHB][hapmap]
rs3134125	0.92[CHD][hapmap]
rs3134142	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs72680983	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:107607600-107618200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:107610800-107619200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr8:107611600-107619400	Weak transcription	Fetal Thymus	thymus
6	chr8:107612800-107618800	Weak transcription	Gastric	stomach
7	chr8:107614400-107618400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:107616000-107620800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr8:107616400-107617600	Enhancers	HUVEC	blood vessel
10	chr8:107616600-107617400	Enhancers	NHDF-Ad	bronchial
11	chr8:107616600-107617600	Enhancers	Stomach Mucosa	stomach
12	chr8:107616600-107617800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr8:107616800-107617400	Enhancers	Colon Smooth Muscle	Colon
14	chr8:107616800-107620200	Weak transcription	Fetal Intestine Large	intestine
15	chr8:107616800-107624200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr8:107617000-107617400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr8:107617000-107617600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr8:107617000-107623400	Weak transcription	Right Atrium	heart
19	chr8:107617200-107617400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr8:107617200-107618800	Weak transcription	NHEK	skin
21	chr8:107617200-107619000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr8:107617200-107619400	Weak transcription	Fetal Kidney	kidney
23	chr8:107617200-107623600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr8:107617200-107641000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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