Variant report

Variant	rs3110430
Chromosome Location	chr8:107606599-107606600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107603658..107609458-chr8:107669183..107672502,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253582	Chromatin interaction
ENSG00000164830	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10505093	0.92[CHD][hapmap]
rs1462810	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1968805	0.82[AMR][1000 genomes]
rs2045786	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2045788	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2282509	0.85[GIH][hapmap]
rs3101526	0.85[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3101528	0.85[CEU][hapmap];0.83[CHB][hapmap];0.81[CHD][hapmap];0.98[GIH][hapmap];0.83[JPT][hapmap];0.96[MEX][hapmap];0.82[TSI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3101542	0.81[CEU][hapmap];0.88[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3101543	0.88[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3101545	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3101546	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3101547	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3101548	0.85[CEU][hapmap];0.89[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.96[MEX][hapmap];0.82[TSI][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3110421	0.85[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3110422	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3110423	0.85[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3110424	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3110426	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3110427	0.97[ASN][1000 genomes]
rs3110433	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3110434	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3110435	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3110775	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3132801	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3132803	0.83[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes]
rs3134121	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3134125	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.83[JPT][hapmap];0.96[ASN][1000 genomes]
rs3134131	0.82[CEU][hapmap];0.85[AMR][1000 genomes]
rs3134132	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3134141	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3134142	0.85[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107592400-107606600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:107601600-107606800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr8:107601600-107610200	Weak transcription	Stomach Mucosa	stomach
5	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:107601800-107606600	Weak transcription	Fetal Intestine Small	intestine
7	chr8:107604400-107606600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr8:107604400-107606600	Weak transcription	Fetal Kidney	kidney
9	chr8:107605000-107607800	Weak transcription	GM12878-XiMat	blood
10	chr8:107605000-107609200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr8:107605200-107609200	Weak transcription	Primary B cells from cord blood	blood
12	chr8:107605200-107609600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr8:107605400-107606600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:107605400-107609600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr8:107605400-107609800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr8:107605600-107609200	Weak transcription	Fetal Thymus	thymus
17	chr8:107606000-107606800	Enhancers	Stomach Smooth Muscle	stomach
18	chr8:107606000-107607400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:107606000-107607600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr8:107606000-107607600	Enhancers	Fetal Heart	heart
21	chr8:107606200-107607000	Enhancers	Colon Smooth Muscle	Colon
22	chr8:107606200-107607600	Enhancers	Rectal Smooth Muscle	rectum
23	chr8:107606200-107609400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr8:107606400-107607000	Enhancers	Duodenum Smooth Muscle	Duodenum

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