Variant report

Variant	rs3110775
Chromosome Location	chr8:107608413-107608414
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107603658..107609458-chr8:107669183..107672502,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253582	Chromatin interaction
ENSG00000164830	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1462810	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1968805	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2045786	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2045788	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3101526	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3101528	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3101542	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3101543	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3101545	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3101546	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3101547	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3101548	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3110421	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3110422	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3110423	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3110424	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3110426	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3110427	0.84[ASN][1000 genomes]
rs3110430	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3110433	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3110434	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3110435	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3132801	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3132803	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3134121	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3134125	0.83[ASN][1000 genomes]
rs3134131	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3134132	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3134141	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3134142	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107601600-107610200	Weak transcription	Stomach Mucosa	stomach
3	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:107605000-107609200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr8:107605200-107609200	Weak transcription	Primary B cells from cord blood	blood
6	chr8:107605200-107609600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr8:107605400-107609600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr8:107605400-107609800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr8:107605600-107609200	Weak transcription	Fetal Thymus	thymus
10	chr8:107606200-107609400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr8:107607400-107610000	Weak transcription	Brain Angular Gyrus	brain
12	chr8:107607400-107610200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr8:107607400-107616400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:107607400-107617000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:107607600-107610000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr8:107607600-107610000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr8:107607600-107610000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr8:107607600-107613800	Weak transcription	Colon Smooth Muscle	Colon
19	chr8:107607600-107616800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr8:107607600-107618200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr8:107608200-107609400	Weak transcription	GM12878-XiMat	blood
22	chr8:107608400-107611600	Enhancers	Thymus	Thymus

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