Variant report

Variant	rs3134125
Chromosome Location	chr8:107591712-107591713
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10505093	0.92[CHD][hapmap]
rs1462810	0.82[ASN][1000 genomes]
rs3101526	0.89[CHB][hapmap]
rs3101528	0.83[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap]
rs3101542	0.88[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap]
rs3101543	0.94[CHB][hapmap]
rs3101545	0.82[ASN][1000 genomes]
rs3101546	0.82[ASN][1000 genomes]
rs3101548	0.89[ASW][hapmap];0.89[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap]
rs3110421	0.89[CHB][hapmap]
rs3110423	0.89[CHB][hapmap]
rs3110427	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3110430	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.83[JPT][hapmap];0.96[ASN][1000 genomes]
rs3110433	0.82[ASN][1000 genomes]
rs3110775	0.83[ASN][1000 genomes]
rs3132803	0.88[CHB][hapmap]
rs3134121	0.97[ASN][1000 genomes]
rs3134142	0.89[CHB][hapmap]
rs72680983	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107587000-107592000	Weak transcription	Brain Germinal Matrix	brain
3	chr8:107590000-107591800	Enhancers	Stomach Mucosa	stomach
4	chr8:107590000-107593600	Enhancers	Fetal Intestine Small	intestine
5	chr8:107590000-107593800	Enhancers	Fetal Intestine Large	intestine
6	chr8:107590200-107601400	Weak transcription	Pancreas	Pancrea
7	chr8:107590800-107592400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:107591000-107592400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr8:107591000-107593000	Enhancers	Fetal Kidney	kidney
10	chr8:107591200-107591800	Enhancers	Fetal Lung	lung
11	chr8:107591200-107592000	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr8:107591200-107592200	Enhancers	Gastric	stomach
13	chr8:107591400-107591800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:107591400-107592000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:107591400-107592400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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