Variant report

Variant	rs3134121
Chromosome Location	chr8:107602822-107602823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1462810	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2045786	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2045788	0.81[EUR][1000 genomes]
rs3101526	0.82[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3101528	0.85[CEU][hapmap]
rs3101542	0.81[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3101543	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3101545	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3101546	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3101547	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3101548	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3110421	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3110422	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3110423	0.82[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3110424	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3110426	0.81[AMR][1000 genomes]
rs3110427	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3110430	0.85[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3110433	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3110434	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3110435	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3110775	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3132803	0.81[CEU][hapmap]
rs3134125	0.81[CEU][hapmap];0.97[ASN][1000 genomes]
rs3134132	0.80[AMR][1000 genomes]
rs3134141	0.83[AMR][1000 genomes]
rs3134142	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72680983	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv981973	chr8:107599981-107603945	Flanking Active TSS Enhancers Weak transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107592400-107606600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:107601600-107606800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr8:107601600-107610200	Weak transcription	Stomach Mucosa	stomach
5	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:107601800-107606600	Weak transcription	Fetal Intestine Small	intestine
7	chr8:107602000-107603800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr8:107602000-107604200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr8:107602200-107606000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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