Variant report

Variant	rs3110435
Chromosome Location	chr8:107621361-107621362
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:107616460..107618563-chr8:107620891..107623162,2	MCF-7	breast:
2	chr8:107617562..107623335-chr8:107668202..107671640,8	MCF-7	breast:
3	chr8:107621102..107628249-chr8:107632909..107636528,6	MCF-7	breast:
4	chr8:107612473..107614720-chr8:107621248..107623288,2	K562	blood:
5	chr8:107616759..107623874-chr8:107668754..107672668,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164830	Chromatin interaction
ENSG00000253582	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10505093	0.81[ASN][1000 genomes]
rs1462810	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1968805	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2045786	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2045788	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3101526	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3101528	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3101542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3101543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3101545	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3101546	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3101547	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3101548	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3110421	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3110422	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3110423	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3110424	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3110426	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3110427	0.81[ASN][1000 genomes]
rs3110430	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3110433	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3110434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3110775	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3132801	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3132803	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3134121	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3134131	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3134132	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3134141	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3134142	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107616800-107624200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr8:107617000-107623400	Weak transcription	Right Atrium	heart
4	chr8:107617200-107623600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr8:107617200-107641000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:107618000-107623800	Enhancers	Stomach Mucosa	stomach
7	chr8:107618200-107621400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr8:107618400-107621800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:107618800-107621400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:107619400-107621400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:107619400-107621400	Flanking Active TSS	GM12878-XiMat	blood
12	chr8:107619800-107622000	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr8:107619800-107622400	Weak transcription	Brain Angular Gyrus	brain
14	chr8:107619800-107622600	Weak transcription	Fetal Kidney	kidney
15	chr8:107619800-107625000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:107620000-107621400	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr8:107620000-107623000	Weak transcription	Fetal Heart	heart
18	chr8:107620000-107629800	Weak transcription	Primary T cells from cord blood	blood
19	chr8:107620200-107621600	Enhancers	Fetal Intestine Large	intestine
20	chr8:107620200-107621600	Enhancers	Fetal Intestine Small	intestine
21	chr8:107620400-107621400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr8:107620400-107621600	Flanking Active TSS	HMEC	breast
23	chr8:107620400-107653400	Weak transcription	Aorta	Aorta
24	chr8:107620600-107621400	Enhancers	Brain Cingulate Gyrus	brain
25	chr8:107620600-107622800	Weak transcription	Esophagus	oesophagus
26	chr8:107620600-107622800	Weak transcription	Gastric	stomach
27	chr8:107620800-107621400	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr8:107620800-107621600	Enhancers	HepG2	liver
29	chr8:107620800-107622000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr8:107621000-107621400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr8:107621000-107621600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr8:107621000-107623400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr8:107621200-107621400	Enhancers	Fetal Lung	lung
34	chr8:107621200-107623200	Weak transcription	Liver	Liver
35	chr8:107621200-107623600	Enhancers	NHEK	skin
36	chr8:107621200-107623800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr8:107621200-107624400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr8:107621200-107627600	Weak transcription	Osteobl	bone
39	chr8:107621200-107629800	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links