Variant report

Variant	rs10505177
Chromosome Location	chr8:113394596-113394597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11988734	1.00[YRI][hapmap]
rs11991999	1.00[YRI][hapmap]
rs11992226	0.94[AFR][1000 genomes]
rs11993544	0.92[YRI][hapmap]
rs11994593	0.92[YRI][hapmap]
rs11995372	0.92[YRI][hapmap]
rs11995925	0.92[YRI][hapmap]
rs11996520	0.92[YRI][hapmap]
rs1540549	1.00[YRI][hapmap]
rs16883536	0.94[AFR][1000 genomes]
rs16883546	0.94[AFR][1000 genomes]
rs16883550	0.94[AFR][1000 genomes]
rs16883554	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs16883598	0.92[YRI][hapmap]
rs16883656	0.92[YRI][hapmap]
rs2056425	0.92[YRI][hapmap]
rs2056426	0.92[YRI][hapmap]
rs55756436	0.84[AFR][1000 genomes]
rs60746545	0.94[AFR][1000 genomes]
rs6999740	0.82[AFR][1000 genomes]
rs7000134	0.82[AFR][1000 genomes]
rs725369	0.92[YRI][hapmap]
rs73700641	0.85[AFR][1000 genomes]
rs73700688	1.00[AFR][1000 genomes]
rs73700689	0.94[AFR][1000 genomes]
rs73700692	0.94[AFR][1000 genomes]
rs73700693	0.94[AFR][1000 genomes]
rs73700695	0.91[AFR][1000 genomes]
rs73700696	0.94[AFR][1000 genomes]
rs73704003	0.94[AFR][1000 genomes]
rs73704005	0.85[AFR][1000 genomes]
rs768555	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2755868	chr8:113282795-113634842	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv2754232	chr8:113294967-113634842	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv891323	chr8:113359377-113394699	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113393400-113394600	Enhancers	Fetal Intestine Large	intestine
2	chr8:113393400-113396400	Enhancers	Fetal Intestine Small	intestine

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