Variant report

Variant	rs16883598
Chromosome Location	chr8:113451142-113451143
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10505177	0.92[YRI][hapmap]
rs11988734	1.00[ASW][hapmap];1.00[LWK][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes]
rs11989763	0.94[AFR][1000 genomes]
rs11990066	0.94[AFR][1000 genomes]
rs11990418	1.00[AFR][1000 genomes]
rs11991999	0.92[YRI][hapmap];0.88[AFR][1000 genomes]
rs11993544	1.00[YRI][hapmap]
rs11994593	1.00[YRI][hapmap]
rs11995372	1.00[YRI][hapmap]
rs11995388	0.93[AFR][1000 genomes]
rs11995925	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs11996520	1.00[YRI][hapmap]
rs1540549	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs16883554	0.92[YRI][hapmap]
rs16883581	1.00[AFR][1000 genomes]
rs16883589	1.00[AFR][1000 genomes]
rs16883607	1.00[AFR][1000 genomes]
rs16883610	1.00[AFR][1000 genomes]
rs16883613	1.00[AFR][1000 genomes]
rs16883625	0.93[AFR][1000 genomes]
rs16883628	0.93[AFR][1000 genomes]
rs16883631	0.93[AFR][1000 genomes]
rs16883633	0.84[AFR][1000 genomes]
rs16883656	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs16883659	0.93[AFR][1000 genomes]
rs16883664	0.93[AFR][1000 genomes]
rs16883674	0.93[AFR][1000 genomes]
rs16883677	0.93[AFR][1000 genomes]
rs16883680	0.93[AFR][1000 genomes]
rs16883684	0.90[AFR][1000 genomes]
rs16883695	0.93[AFR][1000 genomes]
rs16883703	0.93[AFR][1000 genomes]
rs16883713	0.93[AFR][1000 genomes]
rs16883718	0.93[AFR][1000 genomes]
rs16883723	0.93[AFR][1000 genomes]
rs16883733	0.93[AFR][1000 genomes]
rs2056425	1.00[YRI][hapmap]
rs2056426	1.00[YRI][hapmap]
rs2123491	0.87[AFR][1000 genomes]
rs35843056	0.93[AFR][1000 genomes]
rs55864406	0.90[AFR][1000 genomes]
rs56368923	0.93[AFR][1000 genomes]
rs56790296	0.90[AFR][1000 genomes]
rs57253861	0.93[AFR][1000 genomes]
rs57459198	0.93[AFR][1000 genomes]
rs57965169	0.90[AFR][1000 genomes]
rs58177180	1.00[AFR][1000 genomes]
rs58228077	0.93[AFR][1000 genomes]
rs58830898	0.93[AFR][1000 genomes]
rs59127229	0.90[AFR][1000 genomes]
rs60665686	1.00[AFR][1000 genomes]
rs60675083	1.00[AFR][1000 genomes]
rs60761957	0.93[AFR][1000 genomes]
rs60878289	0.93[AFR][1000 genomes]
rs6999740	0.82[AFR][1000 genomes]
rs7000134	0.82[AFR][1000 genomes]
rs725369	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs73700928	0.93[AFR][1000 genomes]
rs73700930	0.93[AFR][1000 genomes]
rs73700933	0.93[AFR][1000 genomes]
rs73700986	0.93[AFR][1000 genomes]
rs73700988	0.93[AFR][1000 genomes]
rs73700989	0.90[AFR][1000 genomes]
rs73702804	1.00[AFR][1000 genomes]
rs73702806	1.00[AFR][1000 genomes]
rs73702808	1.00[AFR][1000 genomes]
rs73702810	1.00[AFR][1000 genomes]
rs73702813	0.93[AFR][1000 genomes]
rs73702878	0.93[AFR][1000 genomes]
rs73702880	0.93[AFR][1000 genomes]
rs73702881	0.93[AFR][1000 genomes]
rs73702882	0.93[AFR][1000 genomes]
rs73702883	0.93[AFR][1000 genomes]
rs73702885	0.93[AFR][1000 genomes]
rs73702887	0.93[AFR][1000 genomes]
rs73702889	0.90[AFR][1000 genomes]
rs768555	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2755868	chr8:113282795-113634842	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv2754232	chr8:113294967-113634842	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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