Variant report

Variant	rs11988734
Chromosome Location	chr8:113492241-113492242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10505177	1.00[YRI][hapmap]
rs11989763	0.87[AFR][1000 genomes]
rs11990066	0.87[AFR][1000 genomes]
rs11990418	0.93[AFR][1000 genomes]
rs11991999	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs11993544	0.91[YRI][hapmap]
rs11994593	0.91[YRI][hapmap]
rs11995372	0.91[YRI][hapmap]
rs11995388	1.00[AFR][1000 genomes]
rs11995925	1.00[ASW][hapmap];1.00[LWK][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes]
rs11996520	0.91[YRI][hapmap]
rs1540549	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs16883554	1.00[YRI][hapmap]
rs16883581	0.93[AFR][1000 genomes]
rs16883589	0.93[AFR][1000 genomes]
rs16883598	1.00[ASW][hapmap];1.00[LWK][hapmap];0.91[YRI][hapmap]
rs16883607	0.93[AFR][1000 genomes]
rs16883610	0.93[AFR][1000 genomes]
rs16883613	0.93[AFR][1000 genomes]
rs16883625	1.00[AFR][1000 genomes]
rs16883628	1.00[AFR][1000 genomes]
rs16883631	1.00[AFR][1000 genomes]
rs16883633	0.91[AFR][1000 genomes]
rs16883656	1.00[ASW][hapmap];1.00[LWK][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes]
rs16883659	1.00[AFR][1000 genomes]
rs16883664	1.00[AFR][1000 genomes]
rs16883674	1.00[AFR][1000 genomes]
rs16883677	1.00[AFR][1000 genomes]
rs16883680	1.00[AFR][1000 genomes]
rs16883684	0.97[AFR][1000 genomes]
rs16883695	1.00[AFR][1000 genomes]
rs16883703	1.00[AFR][1000 genomes]
rs16883713	1.00[AFR][1000 genomes]
rs16883718	1.00[AFR][1000 genomes]
rs16883723	1.00[AFR][1000 genomes]
rs16883733	1.00[AFR][1000 genomes]
rs2056425	0.91[YRI][hapmap]
rs2056426	0.91[YRI][hapmap]
rs2123491	0.81[AFR][1000 genomes]
rs35843056	1.00[AFR][1000 genomes]
rs55864406	0.97[AFR][1000 genomes]
rs56368923	1.00[AFR][1000 genomes]
rs56790296	0.97[AFR][1000 genomes]
rs57253861	1.00[AFR][1000 genomes]
rs57459198	1.00[AFR][1000 genomes]
rs57965169	0.97[AFR][1000 genomes]
rs58177180	0.93[AFR][1000 genomes]
rs58228077	1.00[AFR][1000 genomes]
rs58830898	1.00[AFR][1000 genomes]
rs59127229	0.97[AFR][1000 genomes]
rs60665686	0.93[AFR][1000 genomes]
rs60675083	0.93[AFR][1000 genomes]
rs60761957	1.00[AFR][1000 genomes]
rs60878289	1.00[AFR][1000 genomes]
rs725369	0.91[YRI][hapmap];1.00[AFR][1000 genomes]
rs73700928	1.00[AFR][1000 genomes]
rs73700930	1.00[AFR][1000 genomes]
rs73700933	1.00[AFR][1000 genomes]
rs73700986	1.00[AFR][1000 genomes]
rs73700988	1.00[AFR][1000 genomes]
rs73700989	0.97[AFR][1000 genomes]
rs73702804	0.93[AFR][1000 genomes]
rs73702806	0.93[AFR][1000 genomes]
rs73702808	0.93[AFR][1000 genomes]
rs73702810	0.93[AFR][1000 genomes]
rs73702813	1.00[AFR][1000 genomes]
rs73702878	1.00[AFR][1000 genomes]
rs73702879	0.86[AFR][1000 genomes]
rs73702880	1.00[AFR][1000 genomes]
rs73702881	1.00[AFR][1000 genomes]
rs73702882	1.00[AFR][1000 genomes]
rs73702883	1.00[AFR][1000 genomes]
rs73702885	1.00[AFR][1000 genomes]
rs73702887	1.00[AFR][1000 genomes]
rs73702889	0.90[AFR][1000 genomes]
rs768555	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2755868	chr8:113282795-113634842	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv2754232	chr8:113294967-113634842	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113484200-113496200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:113490600-113493000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:113491200-113492400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:113491800-113492400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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