Variant report

Variant	rs10505182
Chromosome Location	chr8:113268098-113268099
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10505178	0.92[CHB][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];0.82[MEX][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10505180	0.92[CHB][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];0.85[LWK][hapmap];0.82[MEX][hapmap];0.96[MKK][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10505181	0.92[CHB][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];0.82[MEX][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10505183	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955620	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs12155552	0.81[CHB][hapmap]
rs12155895	0.89[CHB][hapmap]
rs12675142	0.83[CHB][hapmap]
rs12675203	0.84[ASN][1000 genomes]
rs12675392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.86[MKK][hapmap];0.94[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12676450	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12677056	0.85[CHB][hapmap];0.88[CHD][hapmap];0.92[MKK][hapmap]
rs12677528	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12677631	0.85[CHB][hapmap]
rs12678444	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12680127	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12680536	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12681572	0.85[CHB][hapmap]
rs1388964	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17554221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17555344	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17556896	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17630545	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.86[MKK][hapmap];0.94[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17637578	0.92[CHB][hapmap];0.82[CHD][hapmap];0.88[GIH][hapmap];0.82[MEX][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17637608	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17638567	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17640016	0.85[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap]
rs17640721	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs2045034	0.85[CHB][hapmap]
rs4540432	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4876463	0.91[CHB][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4876466	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs5020695	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55868089	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55964861	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56148035	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56180460	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56298658	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56333610	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56367843	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs59341078	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs59994716	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs60128946	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs60533422	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61078986	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61189440	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62514381	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514390	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62514391	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62514398	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62514406	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62514407	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62514408	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62514409	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62514420	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62514422	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62514423	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6992196	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6993441	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7011864	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72672840	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72672881	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72674712	0.84[ASN][1000 genomes]
rs72674718	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72674724	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9297473	0.85[CHB][hapmap];0.88[CHD][hapmap];0.81[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113264400-113269200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr8:113264600-113268600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:113265200-113268800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr8:113265200-113269000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr8:113265400-113268800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr8:113266800-113268800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr8:113267400-113268600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:113267600-113275000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr8:113267800-113268800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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