Variant report

Variant	rs17640016
Chromosome Location	chr8:113398091-113398092
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:113396804..113398846-chr8:113404177..113405971,2	MCF-7	breast:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10505178	0.90[CEU][hapmap];0.92[CHB][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.81[EUR][1000 genomes]
rs10505180	0.90[CEU][hapmap];0.92[CHB][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs10505181	0.90[CEU][hapmap];0.92[CHB][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.80[EUR][1000 genomes]
rs10505182	0.85[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap]
rs10505183	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10955620	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs12155552	0.94[CEU][hapmap];0.81[CHB][hapmap]
rs12155895	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12675142	1.00[CHB][hapmap]
rs12675392	0.85[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]
rs12677056	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12677631	0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs12678444	0.81[EUR][1000 genomes]
rs12680127	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12681572	0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs1388964	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17554221	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17555344	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17560620	0.87[CEU][hapmap]
rs17630545	0.85[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]
rs17637578	0.90[CEU][hapmap];0.92[CHB][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.81[EUR][1000 genomes]
rs17637608	0.81[EUR][1000 genomes]
rs17638567	0.81[EUR][1000 genomes]
rs17640721	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes]
rs17647111	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs2045034	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs28548536	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4876285	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4876286	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4876463	0.95[CEU][hapmap];0.83[CHB][hapmap]
rs4876466	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4876471	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4876472	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[TSI][hapmap]
rs55657628	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55802534	0.83[AMR][1000 genomes]
rs55847695	0.83[AMR][1000 genomes]
rs55962846	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55964861	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56139522	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56298658	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56333610	0.81[EUR][1000 genomes]
rs56367843	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58278726	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59341078	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59700311	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59824919	0.83[AMR][1000 genomes]
rs59994716	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60128946	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61189440	0.80[EUR][1000 genomes]
rs62514390	0.80[EUR][1000 genomes]
rs62514391	0.81[EUR][1000 genomes]
rs62514398	0.80[EUR][1000 genomes]
rs62514406	0.81[EUR][1000 genomes]
rs62514407	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62514408	0.82[EUR][1000 genomes]
rs62514409	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62514420	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62514422	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62514423	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62514459	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62516469	0.83[AMR][1000 genomes]
rs62516470	0.83[AMR][1000 genomes]
rs62516472	0.83[AMR][1000 genomes]
rs62516484	0.83[AMR][1000 genomes]
rs62516485	0.83[AMR][1000 genomes]
rs6992196	0.85[CHB][hapmap];1.00[YRI][hapmap]
rs6993441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7011864	0.84[CHB][hapmap]
rs72674712	0.85[EUR][1000 genomes]
rs72674718	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72674724	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72676616	0.83[AMR][1000 genomes]
rs72676619	0.83[AMR][1000 genomes]
rs72676623	0.83[AMR][1000 genomes]
rs73702807	0.83[AMR][1000 genomes]
rs9297473	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[MKK][hapmap];0.88[TSI][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2755868	chr8:113282795-113634842	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv2754232	chr8:113294967-113634842	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113396400-113400000	Weak transcription	Fetal Intestine Small	intestine

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