Variant report

Variant	rs56139522
Chromosome Location	chr8:113405342-113405343
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:113396804..113398846-chr8:113404177..113405971,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12155895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12675142	0.86[AMR][1000 genomes]
rs12677056	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12677631	0.88[AMR][1000 genomes]
rs12681572	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17640016	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17640721	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17647111	0.88[AMR][1000 genomes]
rs28548536	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4876285	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4876286	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4876471	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55657628	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55802534	0.88[AMR][1000 genomes]
rs55847695	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs55962846	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56000487	0.83[AMR][1000 genomes]
rs56124155	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs58278726	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59700311	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59824919	0.88[AMR][1000 genomes]
rs62514459	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62516469	0.88[AMR][1000 genomes]
rs62516470	0.88[AMR][1000 genomes]
rs62516471	0.83[AMR][1000 genomes]
rs62516472	0.88[AMR][1000 genomes]
rs62516484	0.88[AMR][1000 genomes]
rs62516485	0.88[AMR][1000 genomes]
rs72676616	0.88[AMR][1000 genomes]
rs72676619	0.88[AMR][1000 genomes]
rs72676623	0.88[AMR][1000 genomes]
rs73702807	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9297473	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2755868	chr8:113282795-113634842	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv2754232	chr8:113294967-113634842	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113399400-113410600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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