Variant report

Variant	rs12677056
Chromosome Location	chr8:113422382-113422383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10505178	0.81[CEU][hapmap];0.92[CHB][hapmap]
rs10505180	0.81[CEU][hapmap];0.92[CHB][hapmap];0.89[MKK][hapmap]
rs10505181	0.81[CEU][hapmap];0.92[CHB][hapmap]
rs10505182	0.85[CHB][hapmap];0.88[CHD][hapmap];0.92[MKK][hapmap]
rs10505183	0.85[CHB][hapmap]
rs10955620	0.90[CEU][hapmap];0.92[CHB][hapmap]
rs12155552	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs12155895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12675142	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12675392	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs12677631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12681572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1388964	0.90[CEU][hapmap];0.92[CHB][hapmap]
rs17554221	0.85[CHB][hapmap]
rs17555344	0.85[CHB][hapmap]
rs17560620	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs17630545	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs17637578	0.81[CEU][hapmap];0.92[CHB][hapmap]
rs17640016	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17640721	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17647111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes]
rs2045034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28548536	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4876285	0.84[AMR][1000 genomes]
rs4876286	0.86[AMR][1000 genomes]
rs4876287	1.00[ASW][hapmap]
rs4876463	0.85[CEU][hapmap];0.83[CHB][hapmap]
rs4876466	0.85[CEU][hapmap];0.92[CHB][hapmap]
rs4876471	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4876472	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs55657628	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55802534	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55847695	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55962846	0.84[AMR][1000 genomes]
rs56000487	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56124155	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56139522	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58278726	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59700311	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59824919	0.89[AMR][1000 genomes]
rs62514459	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62516469	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62516470	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62516471	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62516472	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62516484	0.89[AMR][1000 genomes]
rs62516485	0.89[AMR][1000 genomes]
rs6992196	0.85[CHB][hapmap]
rs6993441	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs7011864	0.84[CHB][hapmap]
rs72676616	0.89[AMR][1000 genomes]
rs72676619	0.89[AMR][1000 genomes]
rs72676623	0.89[AMR][1000 genomes]
rs73702807	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9297473	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.89[MKK][hapmap];0.94[TSI][hapmap];0.93[ASN][1000 genomes]
rs9650045	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2755868	chr8:113282795-113634842	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv2754232	chr8:113294967-113634842	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv1794114	chr8:113421902-113423734	Weak transcription	n/a	n/a	inside rSNPs	n/a
7	esv3330332	chr8:113422026-113424074	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113411000-113426400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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