Variant report

Variant	rs10505973
Chromosome Location	chr12:25487746-25487747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11047969	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11047974	1.00[AMR][1000 genomes]
rs11047975	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12099691	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12298887	1.00[MEX][hapmap]
rs12308451	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12309390	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16928744	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56145890	1.00[AMR][1000 genomes]
rs56231104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59763974	0.85[AMR][1000 genomes]
rs61453941	1.00[AMR][1000 genomes]
rs7135826	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898928	chr12:25458354-25499342	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv976719	chr12:25482467-25552186	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10505973	GSTM1	trans	lymphoblastoid	seeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25486800-25487800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:25487000-25491200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:25487200-25488400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr12:25487400-25487800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr12:25487400-25488000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr12:25487400-25488600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr12:25487400-25488800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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