Variant report

Variant	rs12308451
Chromosome Location	chr12:25509752-25509753
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10505973	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11047969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11047974	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11047975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12099691	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12309390	0.85[AMR][1000 genomes]
rs16928744	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56145890	1.00[AMR][1000 genomes]
rs56231104	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59763974	0.85[AMR][1000 genomes]
rs61453941	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv976719	chr12:25482467-25552186	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv898929	chr12:25499342-25634138	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	esv3364882	chr12:25509489-25509866	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25501400-25510800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr12:25505400-25510800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr12:25505600-25518200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr12:25508000-25510800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links