Variant report

Variant	rs16928744
Chromosome Location	chr12:25497136-25497137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10505973	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11047969	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11047974	1.00[AMR][1000 genomes]
rs11047975	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12099691	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12308451	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12309390	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56145890	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56231104	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59763974	0.85[AMR][1000 genomes]
rs61453941	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898928	chr12:25458354-25499342	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv976719	chr12:25482467-25552186	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25497000-25499800	Weak transcription	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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