Variant report

Variant	rs56145890
Chromosome Location	chr12:25500524-25500525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10505973	1.00[AMR][1000 genomes]
rs11047969	1.00[AMR][1000 genomes]
rs11047974	1.00[AMR][1000 genomes]
rs11047975	1.00[AMR][1000 genomes]
rs12099691	1.00[AMR][1000 genomes]
rs12308451	1.00[AMR][1000 genomes]
rs12309390	0.85[AMR][1000 genomes]
rs16928744	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56231104	1.00[AMR][1000 genomes]
rs59763974	0.85[AMR][1000 genomes]
rs61453941	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv976719	chr12:25482467-25552186	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv898929	chr12:25499342-25634138	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25498600-25500800	Weak transcription	Placenta	Placenta
2	chr12:25499800-25502200	Enhancers	Thymus	Thymus
3	chr12:25500000-25500600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:25500200-25501400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr12:25500400-25500600	Enhancers	Hela-S3	cervix
6	chr12:25500400-25500800	Enhancers	Psoas Muscle	Psoas
7	chr12:25500400-25501000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr12:25500400-25501000	Enhancers	NHEK	skin
9	chr12:25500400-25501400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr12:25500400-25501400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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