Variant report

Variant	rs10507210
Chromosome Location	chr12:106674681-106674682
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:106617980..106623111-chr12:106673260..106676714,5	MCF-7	breast:
2	chr12:106640861..106643735-chr12:106674267..106678317,3	MCF-7	breast:
3	chr12:106673784..106675625-chr12:106681211..106683347,2	MCF-7	breast:
4	chr12:106622344..106624016-chr12:106673655..106676594,2	MCF-7	breast:
5	chr12:106626663..106628634-chr12:106673414..106675622,2	MCF-7	breast:
6	chr12:106634944..106646449-chr12:106667585..106679535,27	MCF-7	breast:
7	chr12:106672814..106674904-chr12:106696321..106698212,2	MCF-7	breast:
8	chr12:106671489..106676202-chr12:106750086..106752897,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000258355	Chromatin interaction
ENSG00000013503	Chromatin interaction
ENSG00000166046	Chromatin interaction
ENSG00000136026	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10746057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10778460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861566	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10861567	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861569	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112924	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11112926	0.87[ASN][1000 genomes]
rs11112927	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11112928	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1148408	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1148409	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1148410	0.96[ASN][1000 genomes]
rs1148411	0.84[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1148412	0.80[CHB][hapmap];0.94[CHD][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs1148442	0.91[ASN][1000 genomes]
rs1148443	0.95[ASN][1000 genomes]
rs1215808	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12230190	0.96[ASN][1000 genomes]
rs12823006	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2047545	0.90[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2279760	0.81[JPT][hapmap]
rs7304941	0.81[JPT][hapmap]
rs7308143	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7311121	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7311133	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7315560	0.94[CEU][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10507210	CKAP4	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106666200-106680800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr12:106671400-106674800	Weak transcription	Stomach Mucosa	stomach
3	chr12:106672200-106675000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr12:106672800-106675200	Enhancers	Liver	Liver
5	chr12:106673800-106675200	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr12:106673800-106676600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr12:106674000-106677000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr12:106674000-106677200	Enhancers	Fetal Heart	heart
9	chr12:106674200-106675800	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr12:106674600-106676800	Enhancers	HepG2	liver

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