Variant report

Variant	rs10861566
Chromosome Location	chr12:106669031-106669032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:106641409..106644539-chr12:106668096..106670238,5	MCF-7	breast:
2	chr12:106630802..106633610-chr12:106666760..106669656,2	MCF-7	breast:
3	chr12:106634944..106646449-chr12:106667585..106679535,27	MCF-7	breast:
4	chr12:106664388..106667969-chr12:106668032..106670678,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136026	Chromatin interaction
ENSG00000258355	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10507210	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10746057	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10778460	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10861567	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10861569	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11112924	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112926	0.89[ASN][1000 genomes]
rs11112927	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112928	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1148408	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1148409	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1148410	0.93[ASN][1000 genomes]
rs1148411	0.84[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1148412	0.94[CHD][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs1148442	0.93[ASN][1000 genomes]
rs1148443	0.92[ASN][1000 genomes]
rs1215808	0.90[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12230190	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12371989	0.90[EUR][1000 genomes]
rs12823006	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2047545	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2279760	0.81[JPT][hapmap]
rs7304941	0.81[JPT][hapmap]
rs7308143	0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7311121	0.97[ASN][1000 genomes]
rs7311133	0.97[ASN][1000 genomes]
rs7315560	0.97[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106664800-106669600	Enhancers	Stomach Mucosa	stomach
2	chr12:106665600-106669200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr12:106665600-106670200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:106665800-106670800	Weak transcription	Fetal Heart	heart
5	chr12:106666200-106680800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr12:106666400-106669600	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr12:106666400-106670600	Weak transcription	NHEK	skin
8	chr12:106666600-106670400	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr12:106666800-106670400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr12:106667200-106669400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr12:106667400-106669600	Enhancers	Pancreas	Pancrea
12	chr12:106667600-106670400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr12:106667800-106669600	Enhancers	Fetal Intestine Large	intestine
14	chr12:106667800-106669600	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr12:106668000-106669400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr12:106668000-106669600	Enhancers	Colonic Mucosa	Colon
17	chr12:106668000-106669600	Enhancers	Fetal Intestine Small	intestine
18	chr12:106668200-106669400	Enhancers	Spleen	Spleen
19	chr12:106668200-106669400	Enhancers	A549	lung
20	chr12:106668200-106670200	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr12:106668400-106669200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr12:106668400-106669200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr12:106668400-106669200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr12:106668400-106669200	Enhancers	GM12878-XiMat	blood
25	chr12:106668400-106669400	Enhancers	Fetal Kidney	kidney
26	chr12:106668400-106671000	Enhancers	Esophagus	oesophagus
27	chr12:106668600-106669600	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr12:106668800-106669200	Flanking Active TSS	HepG2	liver
29	chr12:106668800-106670800	Enhancers	Primary B cells from peripheral blood	blood
30	chr12:106669000-106669200	Enhancers	Lung	lung
31	chr12:106669000-106669400	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr12:106669000-106669400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr12:106669000-106669400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr12:106669000-106669400	Flanking Active TSS	Liver	Liver
35	chr12:106669000-106669400	Enhancers	Psoas Muscle	Psoas

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