Variant report

Variant	rs7315560
Chromosome Location	chr12:106679777-106679778
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106679605..106682241-chr12:106684127..106685839,2	K562	blood:
2	chr12:106679091..106681654-chr12:106715669..106717926,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10507210	0.94[CEU][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10746057	0.94[CEU][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10778460	0.94[CEU][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861566	0.97[ASN][1000 genomes]
rs10861567	0.82[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861569	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112924	0.97[ASN][1000 genomes]
rs11112926	0.87[ASN][1000 genomes]
rs11112927	0.97[ASN][1000 genomes]
rs11112928	0.97[ASN][1000 genomes]
rs1148408	0.96[ASN][1000 genomes]
rs1148409	0.93[ASN][1000 genomes]
rs1148410	0.96[ASN][1000 genomes]
rs1148411	0.92[ASN][1000 genomes]
rs1148412	0.93[ASN][1000 genomes]
rs1148442	0.91[ASN][1000 genomes]
rs1148443	0.95[ASN][1000 genomes]
rs1215808	0.96[ASN][1000 genomes]
rs12230190	0.96[ASN][1000 genomes]
rs12823006	0.97[ASN][1000 genomes]
rs2047545	0.99[ASN][1000 genomes]
rs7308143	0.94[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7311121	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7311133	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106666200-106680800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr12:106676600-106681000	Weak transcription	Stomach Mucosa	stomach
3	chr12:106677000-106681400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr12:106677200-106682200	Weak transcription	Fetal Intestine Large	intestine
5	chr12:106677200-106683600	Enhancers	HepG2	liver
6	chr12:106677600-106679800	Enhancers	Fetal Brain Male	brain
7	chr12:106678400-106680000	Enhancers	Left Ventricle	heart
8	chr12:106678400-106680000	Enhancers	Right Atrium	heart
9	chr12:106678600-106682800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr12:106678600-106688800	Weak transcription	Lung	lung
11	chr12:106678800-106681000	Weak transcription	NHEK	skin
12	chr12:106678800-106681400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr12:106678800-106682600	Weak transcription	Brain Angular Gyrus	brain
14	chr12:106678800-106682600	Weak transcription	HSMMtube	muscle
15	chr12:106679000-106682400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr12:106679000-106682400	Weak transcription	HUVEC	blood vessel
17	chr12:106679000-106682600	Weak transcription	Esophagus	oesophagus
18	chr12:106679200-106680400	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr12:106679400-106680000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
20	chr12:106679600-106679800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr12:106679600-106679800	Bivalent Enhancer	Primary B cells from cord blood	blood
22	chr12:106679600-106680000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr12:106679600-106680000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr12:106679600-106680000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr12:106679600-106680000	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr12:106679600-106680000	Bivalent Enhancer	GM12878-XiMat	blood
27	chr12:106679600-106680200	Enhancers	Primary B cells from peripheral blood	blood

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