Variant report

Variant	rs10746057
Chromosome Location	chr12:106672006-106672007
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:106664569..106666975-chr12:106671513..106673721,2	MCF-7	breast:
2	chr12:106665603..106667628-chr12:106671305..106673518,2	K562	blood:
3	chr12:106634944..106646449-chr12:106667585..106679535,27	MCF-7	breast:
4	chr12:106671489..106676202-chr12:106750086..106752897,6	MCF-7	breast:
5	chr12:106637914..106641251-chr12:106671714..106674049,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136026	Chromatin interaction
ENSG00000258355	Chromatin interaction
ENSG00000013503	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10507210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10778460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10861566	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10861567	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10861569	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11112924	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11112926	0.89[ASN][1000 genomes]
rs11112927	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11112928	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1148408	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1148409	0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1148410	0.93[ASN][1000 genomes]
rs1148411	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1148412	0.89[CHB][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs1148442	0.93[ASN][1000 genomes]
rs1148443	0.92[ASN][1000 genomes]
rs1215808	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12230190	0.99[ASN][1000 genomes]
rs12823006	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2047545	0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2279760	0.81[JPT][hapmap]
rs7304941	0.81[JPT][hapmap]
rs7308143	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7311121	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7311133	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7315560	0.94[CEU][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106666200-106680800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr12:106669600-106672800	Weak transcription	Liver	Liver
3	chr12:106669600-106673800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr12:106670400-106673000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr12:106670400-106673200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr12:106670800-106672800	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr12:106671200-106673200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr12:106671400-106674800	Weak transcription	Stomach Mucosa	stomach
9	chr12:106671600-106672200	Enhancers	HepG2	liver
10	chr12:106671800-106672200	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr12:106671800-106674000	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links