Variant report

Variant	rs10509101
Chromosome Location	chr10:61134335-61134336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11006472	0.88[ASN][1000 genomes]
rs12411423	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12412866	0.86[ASN][1000 genomes]
rs72810407	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72810412	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72810413	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72810421	0.87[ASN][1000 genomes]
rs74152379	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831888	chr10:60943655-61138251	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv467289	chr10:61075213-61139869	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv551148	chr10:61075213-61139869	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv551149	chr10:61115114-61190125	Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61123200-61134600	Weak transcription	Right Atrium	heart
2	chr10:61123600-61136400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:61126600-61134600	Weak transcription	Brain Anterior Caudate	brain
4	chr10:61126800-61134600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:61126800-61135800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:61128000-61134600	Weak transcription	Brain Substantia Nigra	brain
7	chr10:61131800-61136400	Weak transcription	Left Ventricle	heart
8	chr10:61133200-61134400	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:61133200-61134600	Weak transcription	Fetal Heart	heart
10	chr10:61133200-61136000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:61133400-61136400	Weak transcription	Aorta	Aorta
12	chr10:61133400-61136600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:61133400-61142000	Weak transcription	HSMMtube	muscle
14	chr10:61133800-61134800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr10:61133800-61142000	Weak transcription	NHLF	lung
16	chr10:61133800-61147400	Weak transcription	Ovary	ovary
17	chr10:61134200-61135400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr10:61134200-61136000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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