Variant report

Variant	rs72810412
Chromosome Location	chr10:61144110-61144111
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61142879..61145238-chr10:61145741..61149188,4	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10509101	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11006472	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11006494	0.83[ASN][1000 genomes]
rs12411423	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12412866	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12412878	0.81[ASN][1000 genomes]
rs72810407	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72810413	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72810421	0.91[ASN][1000 genomes]
rs72810445	0.81[ASN][1000 genomes]
rs74152379	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551149	chr10:61115114-61190125	Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61133800-61147400	Weak transcription	Ovary	ovary
2	chr10:61136200-61147400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr10:61139400-61147600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:61142000-61144200	Enhancers	NHLF	lung
5	chr10:61143200-61147200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:61143400-61145200	Enhancers	Liver	Liver
7	chr10:61143400-61146600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:61143400-61147200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:61143600-61145800	Weak transcription	HSMMtube	muscle
10	chr10:61143600-61146400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:61143600-61146400	Weak transcription	Osteobl	bone
12	chr10:61143600-61146600	Weak transcription	NHDF-Ad	bronchial
13	chr10:61143600-61146800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:61143600-61146800	Weak transcription	NH-A	brain
15	chr10:61143600-61147000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:61143600-61147200	Weak transcription	Brain Substantia Nigra	brain
17	chr10:61143600-61147400	Weak transcription	Brain Angular Gyrus	brain
18	chr10:61143600-61147400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr10:61143600-61147600	Weak transcription	Brain Anterior Caudate	brain
20	chr10:61143600-61147600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr10:61143800-61144600	Weak transcription	Fetal Lung	lung
22	chr10:61143800-61146000	Weak transcription	HSMM	muscle
23	chr10:61143800-61147000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:61143800-61147200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:61143800-61147600	Weak transcription	Brain Hippocampus Middle	brain
26	chr10:61143800-61147800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:61143800-61152800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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