Variant report

Variant	rs74152379
Chromosome Location	chr10:61147810-61147811
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61142879..61145238-chr10:61145741..61149188,4	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10509101	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11006472	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11006494	0.84[AMR][1000 genomes]
rs12411423	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12412866	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12412878	0.82[AMR][1000 genomes]
rs1450770	0.84[AMR][1000 genomes]
rs72810407	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72810412	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72810413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72810421	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72810445	0.82[AMR][1000 genomes]
rs72810446	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551149	chr10:61115114-61190125	Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61143800-61152800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr10:61144800-61152800	Weak transcription	Fetal Lung	lung
3	chr10:61146000-61148000	Enhancers	HSMM	muscle
4	chr10:61146400-61148800	Enhancers	HSMMtube	muscle
5	chr10:61146400-61149600	Enhancers	Osteobl	bone
6	chr10:61146600-61149400	Enhancers	NHDF-Ad	bronchial
7	chr10:61146800-61148600	Enhancers	NH-A	brain
8	chr10:61147000-61148200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:61147000-61148600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:61147000-61148600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:61147000-61148600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:61147000-61148600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:61147000-61148600	Enhancers	NHLF	lung
14	chr10:61147000-61149000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:61147200-61148000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr10:61147200-61148200	Enhancers	HMEC	breast
17	chr10:61147200-61148400	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr10:61147200-61148600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:61147200-61148600	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr10:61147200-61149000	Enhancers	Brain Substantia Nigra	brain
21	chr10:61147400-61148200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:61147400-61148200	Enhancers	Brain Cingulate Gyrus	brain
23	chr10:61147400-61148200	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr10:61147400-61148200	Enhancers	Colon Smooth Muscle	Colon
25	chr10:61147400-61148400	Enhancers	Ovary	ovary
26	chr10:61147400-61148800	Enhancers	Brain Angular Gyrus	brain
27	chr10:61147600-61148000	Enhancers	Muscle Satellite Cultured Cells	--
28	chr10:61147600-61148000	Enhancers	Brain Anterior Caudate	brain
29	chr10:61147600-61148000	Enhancers	Stomach Smooth Muscle	stomach
30	chr10:61147600-61148200	Enhancers	Brain Hippocampus Middle	brain
31	chr10:61147600-61148200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:61147600-61148400	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr10:61147600-61148400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr10:61147600-61148400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr10:61147600-61148600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr10:61147800-61148000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr10:61147800-61148400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr10:61147800-61148400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr10:61147800-61148400	Enhancers	Psoas Muscle	Psoas

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