Variant report

Variant	rs11006472
Chromosome Location	chr10:61152652-61152653
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10509101	0.88[ASN][1000 genomes]
rs11006494	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12411423	0.81[ASN][1000 genomes]
rs12412866	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12412878	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12414129	0.81[EUR][1000 genomes]
rs1450770	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59927032	0.81[EUR][1000 genomes]
rs72810407	0.90[ASN][1000 genomes]
rs72810412	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs72810413	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72810421	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72810445	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72810446	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72810452	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72810488	0.81[EUR][1000 genomes]
rs74152379	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551149	chr10:61115114-61190125	Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv508587	chr10:61150897-61278845	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61143800-61152800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr10:61144800-61152800	Weak transcription	Fetal Lung	lung
3	chr10:61148200-61153200	Weak transcription	HMEC	breast
4	chr10:61148600-61153000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:61149000-61153200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:61149200-61152800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:61149400-61152800	Weak transcription	NHDF-Ad	bronchial
8	chr10:61149600-61153000	Weak transcription	HSMM	muscle
9	chr10:61149600-61153000	Weak transcription	Osteobl	bone
10	chr10:61151200-61152800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr10:61151400-61152800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr10:61152000-61153600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr10:61152600-61153600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr10:61152600-61153800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr10:61152600-61153800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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