Variant report

Variant	rs10510759
Chromosome Location	chr3:52607288-52607289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs12107484	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs17052357	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17052404	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1987234	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34173244	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35911561	0.94[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap]
rs35920544	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4532127	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs56156188	0.83[AFR][1000 genomes]
rs56259931	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56960576	1.00[EUR][1000 genomes]
rs57008939	0.83[AFR][1000 genomes]
rs57246324	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57298447	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57319306	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57560655	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57757646	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs57869735	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58100002	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58725214	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58924550	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs60311166	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60415551	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60611300	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs60682984	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs60823713	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60916588	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61220667	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61538294	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6445536	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs6762788	1.00[CEU][hapmap]
rs6774097	1.00[TSI][hapmap]
rs6780005	1.00[CEU][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs72947535	0.86[AFR][1000 genomes]
rs72947580	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72947583	1.00[EUR][1000 genomes]
rs72947584	1.00[EUR][1000 genomes]
rs72947589	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72950430	0.84[AFR][1000 genomes]
rs72950432	0.82[AFR][1000 genomes]
rs72960240	0.85[AMR][1000 genomes]
rs72960281	0.85[AMR][1000 genomes]
rs72965177	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs72965181	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73837804	1.00[EUR][1000 genomes]
rs7619643	0.85[AMR][1000 genomes]
rs7647992	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7648016	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs934839	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs9842960	1.00[MEX][hapmap]
rs9843055	1.00[MEX][hapmap]
rs9868332	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52572400-52633000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:52574400-52623800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr3:52576800-52625600	Strong transcription	Fetal Thymus	thymus
4	chr3:52578200-52625600	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr3:52585800-52627400	Weak transcription	Fetal Heart	heart
6	chr3:52587200-52719200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:52589600-52611600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:52591000-52688000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:52592200-52719200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:52592600-52607600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:52592600-52610400	Weak transcription	A549	lung
12	chr3:52594400-52607800	Weak transcription	Aorta	Aorta
13	chr3:52594400-52614800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:52595200-52631000	Weak transcription	Stomach Mucosa	stomach
15	chr3:52595800-52607800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr3:52596000-52607600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr3:52596000-52608200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:52596000-52608200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr3:52596000-52608200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr3:52596000-52611800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr3:52596000-52612400	Weak transcription	Gastric	stomach
22	chr3:52596000-52622800	Weak transcription	K562	blood
23	chr3:52596000-52624200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:52596400-52611800	Weak transcription	Spleen	Spleen
25	chr3:52597400-52608000	Weak transcription	NHEK	skin
26	chr3:52597400-52611600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr3:52597600-52607600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr3:52597600-52608600	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr3:52597600-52611800	Weak transcription	Pancreas	Pancrea
30	chr3:52597600-52612000	Weak transcription	Brain Substantia Nigra	brain
31	chr3:52597600-52612000	Weak transcription	Right Ventricle	heart
32	chr3:52597600-52612400	Weak transcription	Colonic Mucosa	Colon
33	chr3:52597600-52612600	Weak transcription	Esophagus	oesophagus
34	chr3:52597600-52612600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr3:52597800-52607600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr3:52597800-52611800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr3:52597800-52612400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr3:52597800-52612600	Weak transcription	Small Intestine	intestine
39	chr3:52598000-52607600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr3:52598000-52607800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr3:52598000-52608400	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr3:52598200-52607400	Weak transcription	Left Ventricle	heart
43	chr3:52598200-52607600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr3:52598200-52607600	Weak transcription	Psoas Muscle	Psoas
45	chr3:52598200-52608600	Weak transcription	Fetal Kidney	kidney
46	chr3:52598200-52609800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr3:52598200-52612400	Weak transcription	HMEC	breast
48	chr3:52598200-52612600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr3:52598200-52625200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr3:52598400-52607800	Weak transcription	H1 Cell Line	embryonic stem cell

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