Variant report

Variant	rs10513157
Chromosome Location	chr3:141511447-141511448
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141510389..141512648-chr3:141516090..141517721,2	K562	blood:
2	chr3:141511387..141514014-chr3:141597034..141598647,2	K562	blood:
3	chr3:141509966..141511631-chr3:141513470..141515966,2	MCF-7	breast:
4	chr3:141510800..141513086-chr3:141522997..141525044,2	K562	blood:
5	chr3:141509290..141512769-chr3:141513263..141515246,3	K562	blood:
6	chr3:141510432..141513238-chr3:141595470..141596991,2	K562	blood:
7	chr3:141509980..141511814-chr3:141533732..141536683,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16851811	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2681698	0.87[LWK][hapmap];0.81[MKK][hapmap]
rs59360993	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60532289	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6440039	1.00[MEX][hapmap]
rs6796429	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6802271	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982427	1.00[AMR][1000 genomes]
rs72982439	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982440	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982452	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141504200-141512800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:141508600-141511800	Weak transcription	Thymus	Thymus
3	chr3:141510400-141515400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr3:141511400-141512200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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