Variant report

Variant	rs60532289
Chromosome Location	chr3:141508003-141508004
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10513157	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16851811	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59360993	1.00[AMR][1000 genomes]
rs6796429	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6802271	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982427	1.00[AMR][1000 genomes]
rs72982439	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982440	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982452	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141504200-141512800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:141508000-141508400	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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