Variant report

Variant	rs72982440
Chromosome Location	chr3:141502653-141502654
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10513157	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16851811	1.00[AMR][1000 genomes]
rs59360993	1.00[AMR][1000 genomes]
rs60532289	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6796429	1.00[AMR][1000 genomes]
rs6802271	1.00[AMR][1000 genomes]
rs72982427	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982452	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141497800-141505800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:141501800-141503400	Enhancers	Adipose Nuclei	Adipose
3	chr3:141502000-141503000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:141502400-141503200	Bivalent Enhancer	HepG2	liver
5	chr3:141502400-141504200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:141502600-141504200	Enhancers	Primary hematopoietic stem cells	blood
7	chr3:141502600-141504200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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