Variant report

Variant	rs16851811
Chromosome Location	chr3:141515636-141515637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141514623..141517093-chr3:141594365..141597102,3	K562	blood:
2	chr3:141512385..141514175-chr3:141514363..141516660,2	MCF-7	breast:
3	chr3:141509966..141511631-chr3:141513470..141515966,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000069849	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10513157	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59360993	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60532289	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6440039	1.00[MEX][hapmap]
rs6796429	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6802271	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982427	1.00[AMR][1000 genomes]
rs72982439	1.00[AMR][1000 genomes]
rs72982440	1.00[AMR][1000 genomes]
rs72982452	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141512800-141515800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:141512800-141516400	Enhancers	Primary hematopoietic stem cells	blood
3	chr3:141513200-141516000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr3:141513600-141517800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr3:141513800-141515800	Enhancers	Fetal Muscle Leg	muscle
6	chr3:141513800-141516200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:141513800-141516200	Enhancers	Esophagus	oesophagus
8	chr3:141513800-141517000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:141514000-141517800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:141514200-141515800	Enhancers	Fetal Muscle Trunk	muscle
11	chr3:141514200-141516000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr3:141514200-141516000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr3:141514200-141516000	Enhancers	Placenta	Placenta
14	chr3:141514200-141516400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:141514200-141517200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr3:141514200-141517600	Flanking Active TSS	Dnd41	blood
17	chr3:141514600-141515800	Enhancers	Rectal Smooth Muscle	rectum
18	chr3:141514600-141516000	Enhancers	K562	blood
19	chr3:141514600-141516200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr3:141514600-141517600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
21	chr3:141514800-141515800	Enhancers	Primary B cells from peripheral blood	blood
22	chr3:141514800-141516000	Enhancers	Fetal Stomach	stomach
23	chr3:141514800-141516000	Flanking Active TSS	Thymus	Thymus
24	chr3:141514800-141517000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:141514800-141517800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:141515000-141515800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
27	chr3:141515000-141515800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
28	chr3:141515000-141515800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
29	chr3:141515000-141515800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
30	chr3:141515000-141515800	Enhancers	Brain Hippocampus Middle	brain
31	chr3:141515000-141515800	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr3:141515000-141515800	Bivalent Enhancer	HepG2	liver
33	chr3:141515000-141516000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr3:141515000-141516000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr3:141515000-141516000	Enhancers	Brain Cingulate Gyrus	brain
36	chr3:141515000-141516000	Enhancers	Brain Substantia Nigra	brain
37	chr3:141515000-141516000	Enhancers	Fetal Intestine Small	intestine
38	chr3:141515000-141516000	Enhancers	Lung	lung
39	chr3:141515000-141516000	Enhancers	Spleen	Spleen
40	chr3:141515000-141516200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr3:141515000-141516200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
42	chr3:141515000-141517200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
43	chr3:141515000-141517600	Flanking Active TSS	Stomach Smooth Muscle	stomach
44	chr3:141515000-141517800	Flanking Active TSS	Adipose Nuclei	Adipose
45	chr3:141515200-141515800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
46	chr3:141515200-141515800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
47	chr3:141515200-141515800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr3:141515200-141515800	Flanking Active TSS	Primary T cells from cord blood	blood
49	chr3:141515200-141515800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
50	chr3:141515200-141515800	Enhancers	Muscle Satellite Cultured Cells	--

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