The 2.0 version of rSNPBase

Variant report

Variant rs10515561
Chromosome Location chr5:145171435-145171436
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:145105400-145179000 Weak transcription Pancreas Pancrea
2 chr5:145109400-145194400 Weak transcription Colonic Mucosa Colon
3 chr5:145141200-145194400 Weak transcription Stomach Smooth Muscle stomach
4 chr5:145158400-145176800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
5 chr5:145158400-145177000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
6 chr5:145158400-145179000 Weak transcription Gastric stomach
7 chr5:145158400-145196400 Weak transcription Primary hematopoietic stem cells short term culture blood
8 chr5:145158400-145207000 Weak transcription Esophagus oesophagus
9 chr5:145161000-145176600 Weak transcription HUVEC blood vessel
10 chr5:145161000-145183400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
11 chr5:145162800-145198200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr5:145162800-145212800 Weak transcription Rectal Smooth Muscle rectum
13 chr5:145164200-145172600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
14 chr5:145165800-145184800 Weak transcription Duodenum Smooth Muscle Duodenum
15 chr5:145166600-145174800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
16 chr5:145167000-145176800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
17 chr5:145167200-145172400 Weak transcription HUES64 Cell Line embryonic stem cell
18 chr5:145167200-145172400 Weak transcription iPS-18 Cell Line embryonic stem cell
19 chr5:145167200-145185200 Weak transcription K562 blood
20 chr5:145167400-145172400 Weak transcription HUES6 Cell Line embryonic stem cell
21 chr5:145167400-145174600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr5:145167400-145174800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
23 chr5:145167400-145176000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr5:145167400-145176800 Weak transcription ES-I3 Cell Line embryonic stem cell
25 chr5:145167400-145200600 Weak transcription Fetal Adrenal Gland Adrenal Gland
26 chr5:145167600-145174800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
27 chr5:145167600-145176800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr5:145167800-145173800 Weak transcription Breast Myoepithelial Primary Cells Breast
29 chr5:145167800-145179000 Weak transcription Ovary ovary
30 chr5:145167800-145191600 Weak transcription Left Ventricle heart
31 chr5:145167800-145194800 Weak transcription Fetal Lung lung
32 chr5:145168000-145183000 Weak transcription Fetal Intestine Small intestine
33 chr5:145168000-145203600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr5:145168200-145171800 Weak transcription Sigmoid Colon Sigmoid Colon
35 chr5:145168200-145176400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
36 chr5:145168200-145191200 Weak transcription Fetal Heart heart
37 chr5:145169400-145173000 Strong transcription Duodenum Mucosa Duodenum
38 chr5:145169600-145171800 Strong transcription Rectal Mucosa Donor 31 rectum
39 chr5:145170000-145172000 Strong transcription Fetal Intestine Large intestine
40 chr5:145170000-145172600 Weak transcription Fetal Kidney kidney
41 chr5:145170000-145173600 Weak transcription Rectal Mucosa Donor 29 rectum
42 chr5:145170200-145195400 Weak transcription HepG2 liver
43 chr5:145170400-145171800 Strong transcription Primary hematopoietic stem cells blood
44 chr5:145170600-145213400 Weak transcription Placenta Amnion Placenta Amnion
45 chr5:145171200-145171600 Weak transcription Stomach Mucosa stomach
46 chr5:145171400-145171800 Strong transcription Aorta Aorta
47 chr5:145171400-145171800 Strong transcription Fetal Stomach stomach
48 chr5:145171400-145171800 Enhancers Lung lung
49 chr5:145171400-145172000 Enhancers Psoas Muscle Psoas
50 chr5:145171400-145172800 Enhancers Adipose Nuclei Adipose

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Last update: Aug 31, 2015