Variant report

Variant	rs10516886
Chromosome Location	chr4:91926375-91926376
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10433882	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10433958	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10461125	0.82[CEU][hapmap];0.95[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap]
rs11097283	0.81[CEU][hapmap];0.85[CHB][hapmap];0.82[CHD][hapmap]
rs13136977	0.91[JPT][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs1381300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1599456	0.89[ASN][1000 genomes]
rs1599457	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17199344	0.80[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs17200531	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17265766	0.82[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs17266413	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2035115	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2035116	0.90[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap]
rs2054332	0.82[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap]
rs2126217	0.81[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs2169367	0.87[ASN][1000 genomes]
rs28524051	0.89[ASN][1000 genomes]
rs28811665	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28815191	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41489045	0.80[CHB][hapmap]
rs56057223	0.83[ASN][1000 genomes]
rs57040256	0.87[ASN][1000 genomes]
rs58981735	0.83[ASN][1000 genomes]
rs59871981	0.87[ASN][1000 genomes]
rs62309777	0.83[ASN][1000 genomes]
rs62309789	0.86[ASN][1000 genomes]
rs62309791	0.87[ASN][1000 genomes]
rs62309833	0.89[ASN][1000 genomes]
rs728701	0.89[ASN][1000 genomes]
rs7356176	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs898762	1.00[CEU][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv10533	chr4:91842776-91935992	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv879556	chr4:91889469-91941029	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv879557	chr4:91903868-91954105	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv4423	chr4:91908999-91953040	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv879558	chr4:91911743-91948999	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv437404	chr4:91914415-91941029	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv594836	chr4:91914972-91942194	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv879559	chr4:91918870-92152678	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv879560	chr4:91919028-91948999	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10516886	HSD17B13	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91924800-91933400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:91925800-91930000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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