Variant report
Variant | rs728701 |
---|---|
Chromosome Location | chr4:91927023-91927024 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10433882 | 0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
rs10433958 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs10516886 | 0.89[ASN][1000 genomes] |
rs11097283 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs11097284 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs1381300 | 0.89[ASN][1000 genomes] |
rs1473372 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs1599456 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1599457 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs17199344 | 0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs17200097 | 0.82[EUR][1000 genomes] |
rs17200531 | 0.88[ASN][1000 genomes] |
rs17265766 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2035115 | 0.89[ASN][1000 genomes] |
rs2126217 | 0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2169367 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs28524051 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs28811665 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs28815191 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs41489045 | 0.81[EUR][1000 genomes] |
rs56057223 | 0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs57040256 | 0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs58981735 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs59871981 | 0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs62309774 | 1.00[AFR][1000 genomes];0.80[EUR][1000 genomes] |
rs62309777 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs62309789 | 0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs62309791 | 0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs62309833 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72665459 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs7356176 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv879555 | chr4:91743538-91967602 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
2 | nsv491945 | chr4:91753638-92240582 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv10533 | chr4:91842776-91935992 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
4 | nsv879556 | chr4:91889469-91941029 | Enhancers ZNF genes & repeats Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv879557 | chr4:91903868-91954105 | ZNF genes & repeats Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv4423 | chr4:91908999-91953040 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
7 | nsv879558 | chr4:91911743-91948999 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
8 | nsv437404 | chr4:91914415-91941029 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
9 | nsv594836 | chr4:91914972-91942194 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
10 | nsv879559 | chr4:91918870-92152678 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
11 | nsv879560 | chr4:91919028-91948999 | ZNF genes & repeats Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
12 | nsv436955 | chr4:91926649-91941029 | Enhancers ZNF genes & repeats Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
13 | nsv436956 | chr4:91926649-91941029 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
14 | nsv436957 | chr4:91926649-91941029 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:91924800-91933400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
2 | chr4:91925800-91930000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |