Variant report

Variant	rs11097283
Chromosome Location	chr4:91877301-91877302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10461125	0.82[ASW][hapmap];0.82[CEU][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.83[LWK][hapmap];0.92[MKK][hapmap];0.88[TSI][hapmap]
rs10516886	0.81[CEU][hapmap];0.85[CHB][hapmap];0.82[CHD][hapmap]
rs11097284	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1381300	0.81[CEU][hapmap];0.85[CHB][hapmap]
rs1473372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1599456	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17017842	0.80[CHB][hapmap]
rs17199344	0.94[CHB][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17200531	0.80[CEU][hapmap];0.85[CHB][hapmap];0.82[CHD][hapmap]
rs17265766	0.82[ASW][hapmap];0.82[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.81[JPT][hapmap];0.87[MKK][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17266413	0.82[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2035115	0.85[CHB][hapmap];0.82[CHD][hapmap]
rs2035116	0.82[ASW][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.94[GIH][hapmap];0.84[JPT][hapmap];0.92[MKK][hapmap];0.86[TSI][hapmap]
rs2054332	0.82[ASW][hapmap];0.82[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.83[LWK][hapmap];0.92[MKK][hapmap];0.89[TSI][hapmap]
rs2126217	0.81[CEU][hapmap];0.90[CHB][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2169367	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28524051	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs41489045	0.82[ASW][hapmap];0.96[CEU][hapmap];0.85[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56057223	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57040256	0.83[AMR][1000 genomes]
rs58981735	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59871981	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62309774	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62309777	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62309789	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62309791	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62309833	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72665459	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs728701	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs898762	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv10533	chr4:91842776-91935992	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91871800-91879600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr4:91872000-91879600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:91872200-91878200	Weak transcription	Fetal Intestine Small	intestine
4	chr4:91872200-91879000	Weak transcription	Fetal Intestine Large	intestine
5	chr4:91872200-91885600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr4:91873200-91879000	Weak transcription	Hela-S3	cervix
7	chr4:91876600-91879200	Weak transcription	A549	lung
8	chr4:91877200-91879200	Weak transcription	Fetal Kidney	kidney

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