Variant report

Variant	rs2169367
Chromosome Location	chr4:91914879-91914880
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:91905983..91908591-chr4:91914277..91915974,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10433882	0.87[ASN][1000 genomes]
rs10433958	0.87[ASN][1000 genomes]
rs10461125	0.95[CEU][hapmap]
rs10516886	0.87[ASN][1000 genomes]
rs11097283	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11097284	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1381300	0.87[ASN][1000 genomes]
rs1473372	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1599456	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1599457	0.87[ASN][1000 genomes]
rs17199344	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17200097	0.84[EUR][1000 genomes]
rs17200531	0.87[ASN][1000 genomes]
rs17265766	0.95[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17266413	0.95[CEU][hapmap]
rs2035115	0.87[ASN][1000 genomes]
rs2035116	0.90[CEU][hapmap]
rs2054332	0.95[CEU][hapmap]
rs2126217	0.95[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28524051	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28811665	0.87[ASN][1000 genomes]
rs28815191	0.87[ASN][1000 genomes]
rs41489045	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs56057223	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57040256	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58981735	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59871981	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62309774	0.82[EUR][1000 genomes]
rs62309777	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62309789	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62309791	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62309833	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72665459	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs728701	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7356176	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv10533	chr4:91842776-91935992	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv998409	chr4:91888883-91915429	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv879556	chr4:91889469-91941029	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv879557	chr4:91903868-91954105	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1005674	chr4:91908118-91924377	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv4423	chr4:91908999-91953040	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv461582	chr4:91910883-91925784	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv594835	chr4:91910883-91925784	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv879558	chr4:91911743-91948999	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv437404	chr4:91914415-91941029	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91912000-91915800	Weak transcription	Fetal Heart	heart

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